Rh6BG412300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001117
Physical Location & Seq
Forward (+)
63767201 .. 63767353
153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG412300.1

Sequence Viewer

Length: 153 bp
ATGGGTGGTTGCAGACCGGTGGACAAGATGGTCGTGGTGGTTCTACCGTCTTTGGGTGAGGTGGTCTGCGATGTCGATGTCCTCTGGCAATGGCGCAGGTTGCCAGTGGTGGTGGTATGGAATTCCATGGAGAAAGCTATGGGGTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.58

Weight (kDa)

5.99

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 144
AcsI RAATTY 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 53
AgeI ACCGGT 1 cut(s) 16
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
ApoI RAATTY 1 cut(s) 121
AsiGI ACCGGT 1 cut(s) 16
AspLEI GCGC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 144
BccI CCATC 1 cut(s) 22
BfuAI ACCTGC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 144
BshTI ACCGGT 1 cut(s) 16
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 149
Bsp19I CCATGG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 16
CspAI ACCGGT 1 cut(s) 16
CviAII CATG 1 cut(s) 127
CviJI RGCY 1 cut(s) 137
CviKI_1 RGCY 1 cut(s) 137
DdeI CTNAG 1 cut(s) 150
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 126
EcoRI GAATTC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 130
FaiI YATR 3 cut(s) 118, 128, 140
FatI CATG 1 cut(s) 126
GlaI GCGC 1 cut(s) 95
HapII CCGG 1 cut(s) 17
HhaI GCGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 94
LpnPI CCDG 4 cut(s) 30, 70, 82, 117
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 1 cut(s) 121
MnlI CCTC 2 cut(s) 52, 92
MspI CCGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 100
NcoI CCATGG 1 cut(s) 126
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 146
PinAI ACCGGT 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 149
SetI ASST 3 cut(s) 63, 101, 139
SgeI CNNG 7 cut(s) 29, 37, 46, 97, 109, 116, 139
Sse9I AATT 1 cut(s) 121
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 75
TasI AATT 1 cut(s) 121
TscAI CASTG 1 cut(s) 111
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.