Rh6DG418000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001117
Physical Location & Seq
Forward (+)
60139932 .. 60140442
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG418000.1

Sequence Viewer

Length: 468 bp
ATGGATTGGCCTGGTTTTTTTTACTGTGGTGGTGGGTTGAGGTGTGGTACCTCTGTCGGTGTTGCTTTTGGGGCAACACAGGTTTCTGGGTGGAGTTTGGATCTGGAATTTTTTAAGGATCTAAGGTTTTGTAAGAGGCGATACTGGGAATTTCTTCCTGAGAATATCGAAGGTCTTGGTGCGTTGGGTATTGCCGGCAGCGATGGTGATCCACCCCTGGGGTCTCGGGTCAGTGCTGATGATTGGGTTAACACAGGAAGAGAATGGCCGGTTCTAATGCGGCAACGTATGGCGAAGGAGGTGGTGATCTGGCCTTTGGTGGTTGCAAACCGGCTGACAAGGATGATCGCGGTGGCTCTACCATCGTTGGGCGAGGTGGTCTGCGATGTCGAAGTCCTCTGGCAGCGGCGCAGGTTGCCGGTGGTGGTGGTCTGGAATTCCATGGAGAAAGCTATGGGTTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.32

Weight (kDa)

6.29

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 402
Acc65I GGTACC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 1 cut(s) 350
AciI CCGC 3 cut(s) 280, 350, 406
AclWI GGATC 3 cut(s) 108, 126, 203
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 3 cut(s) 107, 149, 436
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 218, 368
AjnI CCWGG 2 cut(s) 10, 216
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 3 cut(s) 108, 126, 203
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 3 cut(s) 8, 266, 311
ApeKI GCWGC 2 cut(s) 198, 403
ApoI RAATTY 3 cut(s) 107, 149, 436
Asp700I GAANNNNTTC 1 cut(s) 153
Asp718I GGTACC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 411
AsuHPI GGTGA 2 cut(s) 218, 316
AvaI CYCGRG 1 cut(s) 225
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BanI GGYRCC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 210, 415
BccI CCATC 2 cut(s) 197, 370
BciT130I CCWGG 2 cut(s) 12, 218
BcoDI GTCTC 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 402
BisI GCNGC 4 cut(s) 199, 281, 404, 407
BlsI GCNGC 4 cut(s) 200, 282, 405, 408
Bme1390I CCNGG 2 cut(s) 12, 218
BmeT110I CYCGRG 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 12, 218
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 216, 217, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 368
Bse118I RCCGGY 4 cut(s) 194, 268, 330, 418
Bse1I ACTGG 1 cut(s) 149
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 2 cut(s) 12, 218
BseDI CCNNGG 3 cut(s) 216, 217, 441
BseGI GGATG 1 cut(s) 348
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 218, 368
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 210, 415
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 3 cut(s) 10, 268, 313
BshNI GGYRCC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 4 cut(s) 195, 269, 331, 419
BslI CCNNNNNNNGG 2 cut(s) 218, 368
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 3 cut(s) 10, 268, 313
Bso31I GGTCTC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 225
Bsp143I GATC 5 cut(s) 100, 118, 208, 306, 345
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 3 cut(s) 280, 350, 406
BspANI GGCC 3 cut(s) 10, 268, 313
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 402
BspPI GGATC 3 cut(s) 108, 126, 203
BspT107I GGYRCC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 228
BsrFI RCCGGY 4 cut(s) 194, 268, 330, 418
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 4 cut(s) 194, 268, 330, 418
BssECI CCNNGG 3 cut(s) 216, 217, 441
BssMI GATC 5 cut(s) 100, 118, 208, 306, 345
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 12, 218
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 3 cut(s) 122, 159, 465
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 1 cut(s) 348
BstFNI CGCG 1 cut(s) 350
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 5 cut(s) 103, 121, 211, 309, 348
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 5 cut(s) 100, 118, 208, 306, 345
BstMWI GCNNNNNNNGC 2 cut(s) 71, 415
BstNI CCWGG 2 cut(s) 12, 218
BstSCI CCNGG 2 cut(s) 10, 216
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 210, 415
BstX2I RGATCY 2 cut(s) 100, 118
BstYI RGATCY 2 cut(s) 100, 118
BsuRI GGCC 3 cut(s) 10, 268, 313
BtgI CCRYGG 1 cut(s) 441
BtgZI GCGATG 2 cut(s) 216, 399
BtsCI GGATG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 238
BveI ACCTGC 1 cut(s) 402
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 4 cut(s) 194, 268, 330, 418
Csp6I GTAC 1 cut(s) 48
CviAII CATG 1 cut(s) 442
CviJI RGCY 6 cut(s) 10, 268, 313, 334, 356, 452
CviKI_1 RGCY 6 cut(s) 10, 268, 313, 334, 356, 452
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 3 cut(s) 122, 159, 465
DpnI GATC 5 cut(s) 102, 120, 210, 308, 347
DpnII GATC 5 cut(s) 100, 118, 208, 306, 345
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 2 cut(s) 10, 216
EcoT14I CCWWGG 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 1 cut(s) 445
FaiI YATR 3 cut(s) 290, 443, 455
FatI CATG 1 cut(s) 441
Fnu4HI GCNGC 4 cut(s) 199, 281, 404, 407
FokI GGATG 1 cut(s) 355
Fsp4HI GCNGC 4 cut(s) 199, 281, 404, 407
GlaI GCGC 1 cut(s) 410
GluI GCNGC 4 cut(s) 199, 281, 404, 407
HaeIII GGCC 3 cut(s) 10, 268, 313
HapII CCGG 4 cut(s) 195, 269, 331, 419
HhaI GCGC 1 cut(s) 411
Hin1II CATG 1 cut(s) 445
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 4 cut(s) 195, 269, 331, 419
HphI GGTGA 2 cut(s) 218, 316
Hpy166II GTNNAC 1 cut(s) 250
Hpy188III TCNNGA 3 cut(s) 104, 158, 433
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 164, 289
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 415
HpyF3I CTNAG 3 cut(s) 122, 159, 465
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 1 cut(s) 445
HspAI GCGC 1 cut(s) 409
KpnI GGTACC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
KspAI GTTAAC 1 cut(s) 250
Kzo9I GATC 5 cut(s) 100, 118, 208, 306, 345
Lsp1109I GCAGC 2 cut(s) 210, 415
MaeII ACGT 1 cut(s) 286
MalI GATC 5 cut(s) 102, 120, 210, 308, 347
MboI GATC 5 cut(s) 100, 118, 208, 306, 345
MboII GAAGA 2 cut(s) 146, 270
MflI RGATCY 2 cut(s) 100, 118
MluCI AATT 3 cut(s) 107, 149, 436
MnlI CCTC 6 cut(s) 33, 61, 129, 292, 367, 407
MroNI GCCGGC 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 2 cut(s) 114, 249
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 4 cut(s) 195, 269, 331, 419
MspR9I CCNGG 2 cut(s) 12, 218
MvaI CCWGG 2 cut(s) 12, 218
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 71, 415
NaeI GCCGGC 1 cut(s) 196
NcoI CCATGG 1 cut(s) 441
NdeII GATC 5 cut(s) 100, 118, 208, 306, 345
NgoMIV GCCGGC 1 cut(s) 194
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 1 cut(s) 49
PasI CCCWGGG 1 cut(s) 217
PdiI GCCGGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 153
PkrI GCNGC 4 cut(s) 200, 282, 405, 408
Psp6I CCWGG 2 cut(s) 10, 216
PspGI CCWGG 2 cut(s) 10, 216
PspN4I GGNNCC 1 cut(s) 49
PsuI RGATCY 2 cut(s) 100, 118
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 114, 249
SatI GCNGC 4 cut(s) 199, 281, 404, 407
Sau3AI GATC 5 cut(s) 100, 118, 208, 306, 345
ScrFI CCNGG 2 cut(s) 12, 218
Sse9I AATT 3 cut(s) 107, 149, 436
SsiI CCGC 3 cut(s) 280, 350, 406
StyD4I CCNGG 2 cut(s) 10, 216
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 289
TaqI TCGA 2 cut(s) 168, 390
TasI AATT 3 cut(s) 107, 149, 436
TauI GCSGC 2 cut(s) 283, 409
Tru1I TTAA 2 cut(s) 114, 249
Tru9I TTAA 2 cut(s) 114, 249
TscAI CASTG 1 cut(s) 238
TseI GCWGC 2 cut(s) 198, 403
TspRI CASTG 1 cut(s) 238
XapI RAATTY 3 cut(s) 107, 149, 436
XmnI GAANNNNTTC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.