RLG00000021028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001117
Physical Location & Seq
Forward (+)
71183535 .. 71184251
717 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021028

Sequence Viewer

Length: 615 bp
ATGGCCACTGCTAGCCTTATGGCTAAATGGATCTTACTTCTCATCACTTTCGTTCAATCGACAGTGCTGTGTAGGGGTTATTTAGATTTCAGAGACGGTGTATCAAGCCCAGAGCAACGTTTGGTTGCAGACAAGGGTTGGTGGCTCGCGAAGACTCTGGTGCGGCTCTCTGATGGCTTTCAACCGGGGCTTCTTGGCTTAGATTTGGCTACTATAGGTGGTAATGGTGACGGTAGCGGCAATCTCAAAATGGGGTTGAGTTCAGAGATCTATGGCCGTGCTATGTGGTTGCAACGTATGGCGGAGGAGATAGTTCTGGAATTTGGTGGATGCAGACCGGCCGATAAGGATGGTAACGGTGTTTCTATCGGCGTTGGGCTAGGTGGTCTGCAATGTCGATGTCCTCTGGCAGCGGGGCATGTTGCCGGTGGTGATGGTCTAAAATTCCATGGAGAAAGCTATGGGGTGCCTTTAGCATTTCTTGATTGGGTGCCCTTAGGGTTTCCATACCTTGGGCTAGTTGGACCAGGCTTGCTTTGGATGGTGATGTGGATGTCGTGGGCTCGGCCAGAATTGGAAGGGGAGTATGCTACTTCTCTTCCGAAAACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

21.89

Weight (kDa)

5.38

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 466, 490
AccB7I CCANNNNNTGG 1 cut(s) 512
AccII CGCG 1 cut(s) 149
AciI CCGC 4 cut(s) 163, 237, 302, 413
AclI AACGTT 1 cut(s) 118
AclWI GGATC 1 cut(s) 38
AcoI YGGCCR 4 cut(s) 3, 274, 339, 566
AcsI RAATTY 2 cut(s) 320, 443
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 2 cut(s) 56, 182
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 1 cut(s) 459
AluI AGCT 1 cut(s) 459
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 38
AoxI GGCC 4 cut(s) 3, 274, 339, 566
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 2 cut(s) 320, 443
AspS9I GGNCC 1 cut(s) 524
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 239, 443, 556
AsuNHI GCTAGC 1 cut(s) 11
AvaII GGWCC 1 cut(s) 524
AxyI CCTNAGG 1 cut(s) 496
BaeGI GKGCMC 1 cut(s) 495
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 466, 490
BanII GRGCYC 1 cut(s) 565
BbsI GAAGAC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 422
BccI CCATC 4 cut(s) 167, 344, 428, 535
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 528
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 3 cut(s) 12, 380, 518
BfmI CTRYAG 1 cut(s) 213
BglII AGATCT 1 cut(s) 267
BisI GCNGC 3 cut(s) 164, 238, 411
BlsI GCNGC 3 cut(s) 165, 239, 412
Bme1390I CCNGG 2 cut(s) 186, 528
Bme18I GGWCC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 524
BmiI GGNNCC 2 cut(s) 468, 492
BmrFI CCNGG 2 cut(s) 186, 528
BmsI GCATC 1 cut(s) 320
BmtI GCTAGC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 185, 448, 511
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse118I RCCGGY 2 cut(s) 337, 425
Bse21I CCTNAGG 1 cut(s) 496
Bse3DI GCAATG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 3 cut(s) 185, 448, 511
BseGI GGATG 4 cut(s) 335, 355, 546, 558
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMI GCAATG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 495
BseX3I CGGCCG 1 cut(s) 339
BseXI GCAGC 1 cut(s) 422
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 4 cut(s) 5, 276, 341, 568
BshNI GGYRCC 2 cut(s) 466, 490
BsiEI CGRYCG 1 cut(s) 342
BsiSI CCGG 3 cut(s) 185, 338, 426
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsnI GGCC 4 cut(s) 5, 276, 341, 568
Bsp1286I GDGCHC 2 cut(s) 495, 565
Bsp143I GATC 2 cut(s) 30, 267
Bsp19I CCATGG 1 cut(s) 448
Bsp68I TCGCGA 1 cut(s) 149
BspACI CCGC 4 cut(s) 163, 237, 302, 413
BspANI GGCC 4 cut(s) 5, 276, 341, 568
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 468, 492
BspOI GCTAGC 1 cut(s) 15
BspPI GGATC 1 cut(s) 38
BspT107I GGYRCC 2 cut(s) 466, 490
BsrDI GCAATG 1 cut(s) 398
BsrFI RCCGGY 2 cut(s) 337, 425
BssAI RCCGGY 2 cut(s) 337, 425
BssECI CCNNGG 3 cut(s) 185, 448, 511
BssMI GATC 2 cut(s) 30, 267
BssT1I CCWWGG 2 cut(s) 448, 511
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 4 cut(s) 64, 98, 233, 359
Bst6I CTCTTC 1 cut(s) 603
BstC8I GCNNGC 3 cut(s) 13, 147, 533
BstDEI CTNAG 2 cut(s) 199, 496
BstDSI CCRYGG 1 cut(s) 448
BstF5I GGATG 4 cut(s) 335, 355, 546, 558
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 2 cut(s) 33, 270
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 30, 267
BstMCI CGRYCG 1 cut(s) 342
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 184, 526
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 495
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 422
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 30, 267
BstYI RGATCY 2 cut(s) 30, 267
BstZI CGGCCG 1 cut(s) 339
Bsu36I CCTNAGG 1 cut(s) 496
BsuRI GGCC 4 cut(s) 5, 276, 341, 568
BtgI CCRYGG 1 cut(s) 448
BtsCI GGATG 4 cut(s) 335, 355, 546, 558
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 2 cut(s) 6, 69
BtuMI TCGCGA 1 cut(s) 149
Cac8I GCNNGC 3 cut(s) 13, 147, 533
Cfr10I RCCGGY 2 cut(s) 337, 425
Cfr13I GGNCC 1 cut(s) 524
CviAII CATG 2 cut(s) 419, 449
DdeI CTNAG 2 cut(s) 199, 496
DpnI GATC 2 cut(s) 32, 269
DpnII GATC 2 cut(s) 30, 267
EaeI YGGCCR 4 cut(s) 3, 274, 339, 566
EagI CGGCCG 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
EciI GGCGGA 1 cut(s) 317
EclXI CGGCCG 1 cut(s) 339
Eco130I CCWWGG 2 cut(s) 448, 511
Eco24I GRGCYC 1 cut(s) 565
Eco47I GGWCC 1 cut(s) 524
Eco52I CGGCCG 1 cut(s) 339
Eco81I CCTNAGG 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 448, 511
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 2 cut(s) 448, 511
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 2 cut(s) 422, 452
FatI CATG 2 cut(s) 418, 448
FauI CCCGC 1 cut(s) 406
Fnu4HI GCNGC 3 cut(s) 164, 238, 411
FokI GGATG 4 cut(s) 342, 362, 553, 565
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 3 cut(s) 164, 238, 411
FspBI CTAG 3 cut(s) 12, 380, 518
GluI GCNGC 3 cut(s) 164, 238, 411
HaeIII GGCC 4 cut(s) 5, 276, 341, 568
HapII CCGG 3 cut(s) 185, 338, 426
Hin1II CATG 2 cut(s) 422, 452
HinfI GANTC 1 cut(s) 154
HpaII CCGG 3 cut(s) 185, 338, 426
HphI GGTGA 3 cut(s) 239, 443, 556
Hpy188I TCNGA 4 cut(s) 92, 172, 265, 603
Hpy188III TCNNGA 3 cut(s) 148, 317, 482
HpyAV CCTTC 1 cut(s) 572
HpyCH4III ACNGT 4 cut(s) 64, 98, 233, 359
HpyCH4IV ACGT 2 cut(s) 118, 295
HpyCH4V TGCA 4 cut(s) 128, 292, 333, 391
HpyF3I CTNAG 2 cut(s) 199, 496
HpySE526I ACGT 2 cut(s) 118, 295
Hsp92II CATG 2 cut(s) 422, 452
Kzo9I GATC 2 cut(s) 30, 267
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 1 cut(s) 320
MaeI CTAG 3 cut(s) 12, 380, 518
MaeII ACGT 2 cut(s) 118, 295
MaeIII GTNAC 2 cut(s) 227, 353
MalI GATC 2 cut(s) 32, 269
MboI GATC 2 cut(s) 30, 267
MboII GAAGA 2 cut(s) 163, 590
MflI RGATCY 2 cut(s) 30, 267
MhlI GDGCHC 2 cut(s) 495, 565
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 320, 443, 572
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 502
MnlI CCTC 2 cut(s) 298, 414
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 613
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 3 cut(s) 185, 338, 426
MspR9I CCNGG 2 cut(s) 186, 528
MvaI CCWGG 1 cut(s) 528
MvnI CGCG 1 cut(s) 149
NciI CCSGG 1 cut(s) 186
NcoI CCATGG 1 cut(s) 448
NdeII GATC 2 cut(s) 30, 267
NheI GCTAGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 422, 452
NlaIV GGNNCC 2 cut(s) 468, 492
NmeAIII GCCGAG 1 cut(s) 544
NmuCI GTSAC 1 cut(s) 227
NruI TCGCGA 1 cut(s) 149
NspI RCATGY 1 cut(s) 422
PflMI CCANNNNNTGG 1 cut(s) 512
PkrI GCNGC 3 cut(s) 165, 239, 412
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp1406I AACGTT 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 2 cut(s) 468, 492
PspPI GGNCC 1 cut(s) 524
PsuI RGATCY 2 cut(s) 30, 267
RruI TCGCGA 1 cut(s) 149
SaqAI TTAA 1 cut(s) 613
SatI GCNGC 3 cut(s) 164, 238, 411
Sau3AI GATC 2 cut(s) 30, 267
Sau96I GGNCC 1 cut(s) 524
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 186, 528
SduI GDGCHC 2 cut(s) 495, 565
SetI ASST 6 cut(s) 121, 220, 298, 385, 461, 513
SfaNI GCATC 1 cut(s) 320
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 524
Sse9I AATT 3 cut(s) 320, 443, 572
SsiI CCGC 4 cut(s) 163, 237, 302, 413
SspMI CTAG 3 cut(s) 12, 380, 518
StyD4I CCNGG 2 cut(s) 184, 526
StyI CCWWGG 2 cut(s) 448, 511
TaaI ACNGT 4 cut(s) 64, 98, 233, 359
TaiI ACGT 2 cut(s) 121, 298
TaqI TCGA 2 cut(s) 59, 397
TasI AATT 3 cut(s) 320, 443, 572
TauI GCSGC 2 cut(s) 166, 240
Tru1I TTAA 1 cut(s) 613
Tru9I TTAA 1 cut(s) 613
TscAI CASTG 2 cut(s) 13, 69
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 227
TspRI CASTG 2 cut(s) 13, 69
Van91I CCANNNNNTGG 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 2 cut(s) 320, 443
XceI RCATGY 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XspI CTAG 3 cut(s) 12, 380, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.