Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Forward (+)

71194073 .. 71194791

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCACTGCTAGCCTTATGGCTAAATGGATCTTACTTCTCATCACTTTCGTTCAATCGACAGTGCTGTGTGGGGGTTATTTAGATTTCAGAGACGGTGTATCAAGCCCAGAGCAACGTTTGGTTGCTGACAAGGGTTGGTGGCTCGCGGAGACTCTCGTGCGGCTCTCTGATGGCTTTCAACCGGGGCTTCTTGGCCTAGATTTGGCTACTATAGGTGGTAATGGTGACGGTAACGGCAATCTCAAAATGGGGTTGAGTTCAGAGTCAGATCTGTGGTCGTGCTATATGGTTGCGACGTATGGCGGAGGAGATAGGGATCTGGAATTTGGTGGATGCAAACCTGCCGATAAGGATGGTAGCGGTGTTTCTATAGGCGTTGGGCTAGGTGGTCTGCGATGTCGATGTCCTCTGGCAGCGGGGCATGTTGCTAGTGGTGATGGTCTAAAATTCCATGGAGAAAGCTATGGGGTGCCTTTAGCATTTCCTGATTGGGTGCCCTTAGGGTTTCCATACCTTGGGCTGGTTAGACCAAGCTTGCTTTGGATGGTGATGTGGATGTCGTGGGCTCGGCCAGAATTGGAAGGGGAGTATGCTACTTCTCTTCCGAAAACTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

21.97

Weight (kDa)

4.84

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	2 cut(s)	472, 496
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccII	CGCG	1 cut(s)	149
AciI	CCGC	5 cut(s)	149, 163, 306, 363, 419
AclI	AACGTT	1 cut(s)	118
AclWI	GGATC	2 cut(s)	38, 327
AcoI	YGGCCR	2 cut(s)	3, 572
AcsI	RAATTY	2 cut(s)	326, 449
AfiI	CCNNNNNNNGG	3 cut(s)	205, 518, 523
AgsI	TTSAA	2 cut(s)	56, 182
AluBI	AGCT	2 cut(s)	465, 537
AluI	AGCT	2 cut(s)	465, 537
Alw26I	GTCTC	2 cut(s)	87, 146
AlwI	GGATC	2 cut(s)	38, 327
AoxI	GGCC	3 cut(s)	3, 196, 572
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	2 cut(s)	326, 449
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	239, 449, 562
AsuNHI	GCTAGC	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	501
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	472, 496
BanII	GRGCYC	1 cut(s)	571
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	4 cut(s)	167, 350, 434, 541
BceAI	ACGGC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	87, 146
BfaI	CTAG	4 cut(s)	12, 200, 386, 432
BfmI	CTRYAG	2 cut(s)	213, 372
BfuAI	ACCTGC	1 cut(s)	352
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	2 cut(s)	164, 417
BlsI	GCNGC	2 cut(s)	165, 418
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	474, 498
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	326
BmtI	GCTAGC	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	185, 454, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 518, 523
Bse21I	CCTNAGG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	185, 454, 517
BseGI	GGATG	4 cut(s)	341, 361, 552, 564
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	3 cut(s)	205, 518, 523
BseRI	GAGGAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	5, 198, 574
BshNI	GGYRCC	2 cut(s)	472, 496
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	205, 518, 523
BsmAI	GTCTC	2 cut(s)	87, 146
BsmBI	CGTCTC	1 cut(s)	87
BsnI	GGCC	3 cut(s)	5, 198, 574
Bsp1286I	GDGCHC	2 cut(s)	501, 571
Bsp143I	GATC	3 cut(s)	30, 271, 319
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	5 cut(s)	149, 163, 306, 363, 419
BspANI	GGCC	3 cut(s)	5, 198, 574
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	2 cut(s)	474, 498
BspMI	ACCTGC	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	38, 327
BspT107I	GGYRCC	2 cut(s)	472, 496
BssECI	CCNNGG	3 cut(s)	185, 454, 517
BssMI	GATC	3 cut(s)	30, 271, 319
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	454, 517
Bst2BI	CACGAG	1 cut(s)	158
Bst4CI	ACNGT	3 cut(s)	64, 98, 233
Bst6I	CTCTTC	1 cut(s)	609
BstC8I	GCNNGC	3 cut(s)	13, 147, 539
BstDEI	CTNAG	1 cut(s)	502
BstDSI	CCRYGG	1 cut(s)	454
BstF5I	GGATG	4 cut(s)	341, 361, 552, 564
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	3 cut(s)	33, 274, 322
BstMAI	GTCTC	2 cut(s)	87, 146
BstMBI	GATC	3 cut(s)	30, 271, 319
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	2 cut(s)	213, 372
BstSLI	GKGCMC	1 cut(s)	501
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	428
BstX2I	RGATCY	3 cut(s)	30, 271, 319
BstYI	RGATCY	3 cut(s)	30, 271, 319
Bsu36I	CCTNAGG	1 cut(s)	502
BsuRI	GGCC	3 cut(s)	5, 198, 574
BtgI	CCRYGG	1 cut(s)	454
BtgZI	GCGATG	1 cut(s)	412
BtsCI	GGATG	4 cut(s)	341, 361, 552, 564
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	2 cut(s)	6, 69
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	3 cut(s)	13, 147, 539
CviAII	CATG	2 cut(s)	425, 455
DdeI	CTNAG	1 cut(s)	502
DpnI	GATC	3 cut(s)	32, 273, 321
DpnII	GATC	3 cut(s)	30, 271, 319
EaeI	YGGCCR	2 cut(s)	3, 572
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	454, 517
Eco24I	GRGCYC	1 cut(s)	571
Eco81I	CCTNAGG	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	454, 517
EcoT38I	GRGCYC	1 cut(s)	571
ErhI	CCWWGG	2 cut(s)	454, 517
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	2 cut(s)	428, 458
FatI	CATG	2 cut(s)	424, 454
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	164, 417
FokI	GGATG	4 cut(s)	348, 368, 559, 571
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	2 cut(s)	164, 417
FspBI	CTAG	4 cut(s)	12, 200, 386, 432
GluI	GCNGC	2 cut(s)	164, 417
HaeIII	GGCC	3 cut(s)	5, 198, 574
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	2 cut(s)	428, 458
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	2 cut(s)	154, 266
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	3 cut(s)	239, 449, 562
Hpy188I	TCNGA	5 cut(s)	92, 172, 265, 271, 609
Hpy188III	TCNNGA	2 cut(s)	323, 488
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	578
HpyCH4III	ACNGT	3 cut(s)	64, 98, 233
HpyCH4IV	ACGT	2 cut(s)	118, 299
HpyCH4V	TGCA	1 cut(s)	339
HpyF3I	CTNAG	1 cut(s)	502
HpySE526I	ACGT	2 cut(s)	118, 299
Hsp92II	CATG	2 cut(s)	428, 458
Kzo9I	GATC	3 cut(s)	30, 271, 319
LpnPI	CCDG	8 cut(s)	123, 198, 308, 357, 398, 501, 509, 588
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	4 cut(s)	12, 200, 386, 432
MaeII	ACGT	2 cut(s)	118, 299
MaeIII	GTNAC	2 cut(s)	227, 233
MalI	GATC	3 cut(s)	32, 273, 321
MboI	GATC	3 cut(s)	30, 271, 319
MboII	GAAGA	1 cut(s)	596
MflI	RGATCY	3 cut(s)	30, 271, 319
MhlI	GDGCHC	2 cut(s)	501, 571
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	326, 449, 578
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	148, 275
MnlI	CCTC	2 cut(s)	302, 420
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	619
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	149
NciI	CCSGG	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	30, 271, 319
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	428, 458
NlaIV	GGNNCC	2 cut(s)	474, 498
NmeAIII	GCCGAG	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	227
NspI	RCATGY	1 cut(s)	428
PflMI	CCANNNNNTGG	1 cut(s)	518
PkrI	GCNGC	2 cut(s)	165, 418
PleI	GAGTC	2 cut(s)	148, 274
PpsI	GAGTC	2 cut(s)	148, 274
Psp1406I	AACGTT	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	474, 498
PsuI	RGATCY	3 cut(s)	30, 271, 319
SaqAI	TTAA	1 cut(s)	619
SatI	GCNGC	2 cut(s)	164, 417
Sau3AI	GATC	3 cut(s)	30, 271, 319
SchI	GAGTC	2 cut(s)	148, 275
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	501, 571
SetI	ASST	8 cut(s)	121, 220, 302, 346, 391, 467, 519, 539
SfaNI	GCATC	1 cut(s)	326
SfcI	CTRYAG	2 cut(s)	213, 372
Sse9I	AATT	3 cut(s)	326, 449, 578
SsiI	CCGC	5 cut(s)	149, 163, 306, 363, 419
SspMI	CTAG	4 cut(s)	12, 200, 386, 432
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	2 cut(s)	454, 517
TaaI	ACNGT	3 cut(s)	64, 98, 233
TaiI	ACGT	2 cut(s)	121, 302
TaqI	TCGA	2 cut(s)	59, 403
TasI	AATT	3 cut(s)	326, 449, 578
TauI	GCSGC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	619
Tru9I	TTAA	1 cut(s)	619
TscAI	CASTG	2 cut(s)	13, 69
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	227
TspRI	CASTG	2 cut(s)	13, 69
Van91I	CCANNNNNTGG	1 cut(s)	518
XapI	RAATTY	2 cut(s)	326, 449
XceI	RCATGY	1 cut(s)	428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XspI	CTAG	4 cut(s)	12, 200, 386, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.