pycom16g09810

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
6695248 .. 6695598
351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09810.1

Sequence Viewer

Length: 351 bp
ATGCCAAACTTCTCTTCCATGTTCAAGGTCTCTGGTACAACTCCATTTTCAAGCTTCCAATCGTCAAACGAGTTAATAAGCGAGCCCAACATCAAATTCAACATTCTCATTGCCAATGGCAATCCAGGACATATACTCCTCCCACCACCAAACGGAATAAGCTCAAAATTTCCTCCTAAAACATCAATTTCCGAATCCAAAAACCTCTCCGGCATAAACGAGTTCCGCCGATGGATCGTCCCAAATGTTGGGGTCTCTCCCTATGGCCCATGCATTGACCAATACTTGTGCACCCTTTGGTACAATGTACCCGCAGATTTCAACATCTATTTCGGCTTTTCGAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.92

Weight (kDa)

9.03

Isoelectric Point (pI)

69.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 248
AciI CCGC 2 cut(s) 226, 312
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 2 cut(s) 95, 167
AfaI GTAC 3 cut(s) 37, 302, 309
AfiI CCNNNNNNNGG 2 cut(s) 152, 248
AgsI TTSAA 4 cut(s) 25, 51, 100, 322
AjnI CCWGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 3 cut(s) 30, 80, 112
AluBI AGCT 2 cut(s) 54, 162
AluI AGCT 2 cut(s) 54, 162
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 2 cut(s) 34, 259
Alw44I GTGCAC 1 cut(s) 289
AlwI GGATC 1 cut(s) 242
AoxI GGCC 1 cut(s) 265
ApaLI GTGCAC 1 cut(s) 289
ApoI RAATTY 2 cut(s) 95, 167
AspS9I GGNCC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 293
BccI CCATC 1 cut(s) 225
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 34, 259
Bme1390I CCNGG 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 126
BsaI GGTCTC 2 cut(s) 34, 259
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 248
Bse3DI GCAATG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 152, 248
BseMI GCAATG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 293
BshFI GGCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 293
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 152, 248
BsmAI GTCTC 2 cut(s) 34, 259
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 267
Bso31I GGTCTC 2 cut(s) 34, 259
Bsp1286I GDGCHC 2 cut(s) 87, 293
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 2 cut(s) 226, 312
BspANI GGCC 1 cut(s) 267
BspPI GGATC 1 cut(s) 242
BspTNI GGTCTC 2 cut(s) 34, 259
BsrDI GCAATG 1 cut(s) 108
BssMI GATC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 83
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 2 cut(s) 34, 259
BstMBI GATC 1 cut(s) 234
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSLI GKGCMC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 3 cut(s) 36, 301, 308
CviAII CATG 2 cut(s) 19, 270
CviJI RGCY 5 cut(s) 54, 85, 162, 267, 336
CviKI_1 RGCY 5 cut(s) 54, 85, 162, 267, 336
CviQI GTAC 3 cut(s) 36, 301, 308
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
EciI GGCGGA 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 2 cut(s) 34, 259
EcoRII CCWGG 1 cut(s) 124
EcoT22I ATGCAT 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 2 cut(s) 22, 273
FaiI YATR 6 cut(s) 20, 132, 134, 215, 264, 271
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 18, 269
FauI CCCGC 1 cut(s) 319
FriOI GRGCYC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 210
Hin1II CATG 2 cut(s) 22, 273
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 273, 291
Hsp92II CATG 2 cut(s) 22, 273
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 4 cut(s) 18, 111, 138, 223
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 87, 293
MluCI AATT 3 cut(s) 95, 167, 186
MnlI CCTC 4 cut(s) 149, 183, 215, 336
Mph1103I ATGCAT 1 cut(s) 275
MseI TTAA 1 cut(s) 74
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
NdeII GATC 1 cut(s) 234
NlaIII CATG 2 cut(s) 22, 273
NsiI ATGCAT 1 cut(s) 275
PfeI GAWTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspPI GGNCC 1 cut(s) 266
RsaI GTAC 3 cut(s) 37, 302, 309
RsaNI GTAC 3 cut(s) 36, 301, 308
SaqAI TTAA 1 cut(s) 74
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 2 cut(s) 87, 293
SetI ASST 4 cut(s) 30, 56, 164, 207
Sse9I AATT 3 cut(s) 95, 167, 186
SsiI CCGC 2 cut(s) 226, 312
StyD4I CCNGG 1 cut(s) 124
TaqI TCGA 1 cut(s) 341
TasI AATT 3 cut(s) 95, 167, 186
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 248
VneI GTGCAC 1 cut(s) 289
XapI RAATTY 2 cut(s) 95, 167
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.