RLG00000022208

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
81713372 .. 81714299
928 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022208

Sequence Viewer

Length: 305 bp
ATGTCGCAGGGTTGTCGGCAGCTTCTCGGCAGGGGCCTCGGCAGGTGTCGGCAGGTGCTAGGCAGTTATCGGCAGGTGCTCGGCAGGTGTCGGCAGGAATCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGATGCTCGGCAGGTCTCGGCAGAACATGGTCCATGATCTTCAATCGAGAAATAGGCCTGGCTATAACTTCACACGCGATGTCAAACCATCAGCATTTATGCATGGTAAATTATCATCTTCGGGTCTCATCGTGTCGGTCACACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.02

Weight (kDa)

11.45

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 8 cut(s) 33, 43, 64, 75, 95, 116, 127, 137
AccII CGCG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw21I GWGCWC 3 cut(s) 81, 112, 133
Alw26I GTCTC 3 cut(s) 124, 176, 286
AoxI GGCC 2 cut(s) 34, 211
ApeKI GCWGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 34, 186
AvaII GGWCC 1 cut(s) 186
Bbv12I GWGCWC 3 cut(s) 81, 112, 133
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 252
BcgI CGANNNNNNTGC 3 cut(s) 19, 30, 53
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 3 cut(s) 124, 176, 286
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 34, 186
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 149
BsaI GGTCTC 3 cut(s) 124, 176, 286
BsaJI CCNNGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 2 cut(s) 36, 213
BsiHKAI GWGCWC 3 cut(s) 81, 112, 133
BsmAI GTCTC 3 cut(s) 124, 176, 286
BsnI GGCC 2 cut(s) 36, 213
Bso31I GGTCTC 3 cut(s) 124, 176, 286
Bsp1286I GDGCHC 3 cut(s) 81, 112, 133
Bsp143I GATC 1 cut(s) 192
BspANI GGCC 2 cut(s) 36, 213
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 35
BspTNI GGTCTC 3 cut(s) 124, 176, 286
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 215
BstFNI CGCG 1 cut(s) 233
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 3 cut(s) 124, 176, 286
BstMBI GATC 1 cut(s) 192
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 31
BsuRI GGCC 2 cut(s) 36, 213
BtgZI GCGATG 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 34, 186
CviAII CATG 3 cut(s) 183, 190, 259
CviJI RGCY 4 cut(s) 22, 36, 213, 218
CviKI_1 RGCY 4 cut(s) 22, 36, 213, 218
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 213
Eco31I GGTCTC 3 cut(s) 124, 176, 286
Eco47I GGWCC 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 260
FaeI CATG 3 cut(s) 186, 193, 262
FaiI YATR 5 cut(s) 184, 191, 221, 256, 260
FatI CATG 3 cut(s) 182, 189, 258
Fnu4HI GCNGC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 20
HaeIII GGCC 2 cut(s) 36, 213
Hin1II CATG 3 cut(s) 186, 193, 262
HinfI GANTC 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 258
Hsp92II CATG 3 cut(s) 186, 193, 262
Kzo9I GATC 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 149
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 294
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 187, 266
MhlI GDGCHC 3 cut(s) 81, 112, 133
MluCI AATT 1 cut(s) 265
MnlI CCTC 1 cut(s) 47
Mph1103I ATGCAT 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 233
NdeII GATC 1 cut(s) 192
NlaIII CATG 3 cut(s) 186, 193, 262
NlaIV GGNNCC 1 cut(s) 35
NmeAIII GCCGAG 8 cut(s) 6, 18, 60, 91, 101, 112, 143, 153
NmuCI GTSAC 1 cut(s) 294
NsiI ATGCAT 1 cut(s) 260
PaqCI CACCTGC 8 cut(s) 33, 43, 64, 75, 95, 116, 127, 137
PceI AGGCCT 1 cut(s) 213
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 2 cut(s) 34, 186
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 2 cut(s) 34, 186
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 3 cut(s) 81, 112, 133
SfaNI GCATC 1 cut(s) 149
SinI GGWCC 1 cut(s) 186
Sse9I AATT 1 cut(s) 265
SseBI AGGCCT 1 cut(s) 213
SspMI CTAG 1 cut(s) 59
StuI AGGCCT 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 213
TaqI TCGA 1 cut(s) 202
TaqII GACCGA 1 cut(s) 282
TasI AATT 1 cut(s) 265
TfiI GAWTC 1 cut(s) 98
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 186
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.