RLG00000023545

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
25113204 .. 25114660
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023545

Sequence Viewer

Length: 348 bp
ATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGGCGTCGGCAGCTATCGGCAGCTATCGGCAGGTGTGTGCAGGGCTGTCGGCAGCTTCTCGGCAGGGGCCTCGGCTGGTGTCGGCAGGTGCTAGGCAGTTATCGGCAGGTGCTCGGCAGGTGTCGACAGGTCTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGATCTCTCGCCGACTTGTCGCTCGACCGCGGCATCTACAACGGCGATAGCGACACCAAACCTCCTCTTCTCTGCTGCGATTCCATACCTCCCAGAATCCCTTACCTTCAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

11.65

Weight (kDa)

9.88

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 155
AccII CGCG 1 cut(s) 261
AciI CCGC 2 cut(s) 259, 261
AcuI CTGAAG 1 cut(s) 323
AcyI GRCGYC 1 cut(s) 35
AluBI AGCT 3 cut(s) 44, 54, 86
AluI AGCT 3 cut(s) 44, 54, 86
Alw21I GWGCWC 4 cut(s) 145, 176, 197, 218
Alw26I GTCTC 1 cut(s) 167
AoxI GGCC 2 cut(s) 23, 98
ApeKI GCWGC 4 cut(s) 41, 51, 83, 306
AspS9I GGNCC 2 cut(s) 23, 98
Bbv12I GWGCWC 4 cut(s) 145, 176, 197, 218
BbvI GCAGC 4 cut(s) 53, 63, 95, 293
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 9 cut(s) 8, 30, 42, 60, 83, 94, 117, 220, 254
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 123
BglII AGATCT 1 cut(s) 233
BisI GCNGC 5 cut(s) 42, 52, 84, 262, 307
BlsI GCNGC 5 cut(s) 43, 53, 85, 263, 308
BmgT120I GGNCC 2 cut(s) 23, 98
BmiI GGNNCC 2 cut(s) 24, 99
BmsI GCATC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 26, 101, 259
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
BseDI CCNNGG 3 cut(s) 26, 101, 259
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 4 cut(s) 53, 63, 95, 293
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 2 cut(s) 25, 100
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 4 cut(s) 145, 176, 197, 218
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 2 cut(s) 25, 100
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 4 cut(s) 145, 176, 197, 218
Bsp143I GATC 1 cut(s) 233
BspACI CCGC 2 cut(s) 259, 261
BspANI GGCC 2 cut(s) 25, 100
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 24, 99
BspTNI GGTCTC 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 26, 101, 259
BssMI GATC 1 cut(s) 233
BssNI GRCGYC 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 1 cut(s) 236
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 1 cut(s) 233
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 4 cut(s) 53, 63, 95, 293
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 2 cut(s) 25, 100
BtgI CCRYGG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 23, 98
Cfr42I CCGCGG 1 cut(s) 262
CseI GACGC 1 cut(s) 24
CviJI RGCY 7 cut(s) 25, 44, 54, 76, 86, 100, 106
CviKI_1 RGCY 7 cut(s) 25, 44, 54, 76, 86, 100, 106
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 323
EcoO109I RGGNCCY 2 cut(s) 23, 98
FaiI YATR 2 cut(s) 317, 346
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 5 cut(s) 42, 52, 84, 262, 307
Fsp4HI GCNGC 5 cut(s) 42, 52, 84, 262, 307
FspBI CTAG 1 cut(s) 123
GluI GCNGC 5 cut(s) 42, 52, 84, 262, 307
HaeIII GGCC 2 cut(s) 25, 100
HgaI GACGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 2 cut(s) 311, 327
Hpy166II GTNNAC 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 347
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 35
KspI CCGCGG 1 cut(s) 262
Kzo9I GATC 1 cut(s) 233
Lsp1109I GCAGC 4 cut(s) 53, 63, 95, 293
LweI GCATC 1 cut(s) 273
MaeI CTAG 1 cut(s) 123
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MboII GAAGA 1 cut(s) 290
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 4 cut(s) 145, 176, 197, 218
MnlI CCTC 5 cut(s) 36, 111, 303, 306, 330
MspA1I CMGCKG 1 cut(s) 261
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 233
NlaIV GGNNCC 2 cut(s) 24, 99
NmeAIII GCCGAG 8 cut(s) 7, 70, 82, 124, 144, 155, 176, 197
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfeI GAWTC 2 cut(s) 311, 327
PkrI GCNGC 5 cut(s) 43, 53, 85, 263, 308
PspN4I GGNNCC 2 cut(s) 24, 99
PspPI GGNCC 2 cut(s) 23, 98
PsuI RGATCY 1 cut(s) 233
SacII CCGCGG 1 cut(s) 262
SalI GTCGAC 1 cut(s) 154
SatI GCNGC 5 cut(s) 42, 52, 84, 262, 307
Sau3AI GATC 1 cut(s) 233
Sau96I GGNCC 2 cut(s) 23, 98
SduI GDGCHC 4 cut(s) 145, 176, 197, 218
SfaNI GCATC 1 cut(s) 273
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SsiI CCGC 2 cut(s) 259, 261
SspMI CTAG 1 cut(s) 123
TaqI TCGA 2 cut(s) 155, 255
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 2 cut(s) 311, 327
TseI GCWGC 4 cut(s) 41, 51, 83, 306
XmiI GTMKAC 1 cut(s) 155
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.