Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Forward (+)

72142734 .. 72143231

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGACACTGCTAGCCTTCTGGCTAAATGGATCTTACTCCTCGTCACTTTCATTCAACCGAAGGTGCTGTGTGGGGGTTCTTTGGAGTTCGGAAACGGTGTATCAAGCCTAGAGCAACGTTTGGTCACTGACAAGAGTTGGTGGATCACGAAGACTCTAGTGCGACTTTCTGATGGCTTTCTACCGGGGCTTCTTGGTCTGGATTTGACTGCTACAGGTGATTATGTGTATGGTAGCGGTAATCTCAAAATGGTGAAGATCGACGTGATCGGGTTCAGAGGGGGATGGACTAGTGTTAGGGTGATTGCCGACCACTATTCTATTCTGCTTCGATCTGCACTTGTTGGAGAGGCTAACGACGGGGAAGGGCTGCTTAGGTCGGATCTGTCGCGGTGCTATGCGGCGGGGACGTATGGCAGAGGAGGTGGTGATCTGGAGTTTGGTGATTGCAGGCCAGCGGACAAGGTTGTCGAGGTGATTCTACTGTCGTTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

17.76

Weight (kDa)

5.37

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
AccII	CGCG	1 cut(s)	391
AciI	CCGC	5 cut(s)	237, 391, 401, 404, 458
AclI	AACGTT	1 cut(s)	118
AclWI	GGATC	3 cut(s)	38, 152, 390
AgsI	TTSAA	1 cut(s)	56
AhlI	ACTAGT	1 cut(s)	290
AjiI	CACGTC	1 cut(s)	265
AlwI	GGATC	3 cut(s)	38, 152, 390
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	370
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	6 cut(s)	230, 265, 313, 440, 455, 487
AsuNHI	GCTAGC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	2 cut(s)	167, 279
BcnI	CCSGG	1 cut(s)	186
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	5 cut(s)	12, 110, 158, 291, 496
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	2 cut(s)	371, 402
BlsI	GCNGC	2 cut(s)	372, 403
Bme1390I	CCNGG	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	186
BmtI	GCTAGC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	290
BseRI	GAGGAG	2 cut(s)	29, 435
BseXI	GCAGC	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	454
Bsp143I	GATC	7 cut(s)	30, 144, 258, 267, 332, 382, 430
BspACI	CCGC	5 cut(s)	237, 391, 401, 404, 458
BspANI	GGCC	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	391
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	38, 152, 390
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	7 cut(s)	30, 144, 258, 267, 332, 382, 430
Bst4CI	ACNGT	2 cut(s)	98, 486
BstC8I	GCNNGC	3 cut(s)	13, 452, 456
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	290
BstFNI	CGCG	1 cut(s)	391
BstKTI	GATC	7 cut(s)	33, 147, 261, 270, 335, 385, 433
BstMBI	GATC	7 cut(s)	30, 144, 258, 267, 332, 382, 430
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	357
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	30, 382
BstYI	RGATCY	2 cut(s)	30, 382
BsuRI	GGCC	1 cut(s)	454
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	290
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	2 cut(s)	6, 126
Cac8I	GCNNGC	3 cut(s)	13, 452, 456
CviJI	RGCY	8 cut(s)	15, 23, 108, 177, 190, 353, 370, 454
CviKI_1	RGCY	8 cut(s)	15, 23, 108, 177, 190, 353, 370, 454
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	7 cut(s)	32, 146, 260, 269, 334, 384, 432
DpnII	GATC	7 cut(s)	30, 144, 258, 267, 332, 382, 430
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
FaiI	YATR	4 cut(s)	225, 231, 399, 414
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	421
FauI	CCCGC	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	371, 402
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	2 cut(s)	371, 402
FspBI	CTAG	5 cut(s)	12, 110, 158, 291, 496
GluI	GCNGC	2 cut(s)	371, 402
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	1 cut(s)	185
HinfI	GANTC	2 cut(s)	154, 478
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	6 cut(s)	230, 265, 313, 440, 455, 487
Hpy188I	TCNGA	4 cut(s)	92, 172, 278, 382
Hpy188III	TCNNGA	3 cut(s)	148, 200, 434
Hpy99I	CGWCG	2 cut(s)	266, 362
HpyAV	CCTTC	3 cut(s)	26, 55, 359
HpyCH4III	ACNGT	2 cut(s)	98, 486
HpyCH4IV	ACGT	3 cut(s)	118, 264, 410
HpyCH4V	TGCA	2 cut(s)	338, 450
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	3 cut(s)	118, 264, 410
Kzo9I	GATC	7 cut(s)	30, 144, 258, 267, 332, 382, 430
LpnPI	CCDG	7 cut(s)	5, 185, 198, 201, 419, 436, 468
Lsp1109I	GCAGC	1 cut(s)	357
MaeI	CTAG	5 cut(s)	12, 110, 158, 291, 496
MaeII	ACGT	3 cut(s)	118, 264, 410
MaeIII	GTNAC	2 cut(s)	43, 124
MalI	GATC	7 cut(s)	32, 146, 260, 269, 334, 384, 432
MboI	GATC	7 cut(s)	30, 144, 258, 267, 332, 382, 430
MboII	GAAGA	2 cut(s)	163, 268
MflI	RGATCY	2 cut(s)	30, 382
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	2 cut(s)	325, 360
MnlI	CCTC	6 cut(s)	50, 272, 343, 413, 416, 466
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	391
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	7 cut(s)	30, 144, 258, 267, 332, 382, 430
NheI	GCTAGC	1 cut(s)	11
NmuCI	GTSAC	2 cut(s)	43, 124
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	372, 403
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp1406I	AACGTT	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	30, 382
SatI	GCNGC	2 cut(s)	371, 402
Sau3AI	GATC	7 cut(s)	30, 144, 258, 267, 332, 382, 430
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	9 cut(s)	66, 121, 220, 267, 380, 413, 427, 468, 477
SfcI	CTRYAG	1 cut(s)	213
SpeI	ACTAGT	1 cut(s)	290
SsiI	CCGC	5 cut(s)	237, 391, 401, 404, 458
SspMI	CTAG	5 cut(s)	12, 110, 158, 291, 496
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	98, 486
TaiI	ACGT	3 cut(s)	121, 267, 413
TaqI	TCGA	3 cut(s)	261, 331, 471
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	478
TscAI	CASTG	2 cut(s)	13, 133
TseFI	GTSAC	2 cut(s)	43, 124
TseI	GCWGC	1 cut(s)	370
Tsp45I	GTSAC	2 cut(s)	43, 124
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	13, 133
XspI	CTAG	5 cut(s)	12, 110, 158, 291, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.