Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Reverse (-)

52938493 .. 52939079

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG228000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTCGTCACCCTCTTGATCATCGTCTTCTACGCCCAGAAGTCTGACGCCTACGTCCGGATCAACCTGGGCCTGGGTTTGTTTGTGGTGTTGCTGCTCATCATCCCGGTGTTGCACTTGATCTGCATCCAGGGCCGCGTCGGGTTTTACCTCACGGTTGCAGCTGTTGCACTTTCAGGCACTGCTGATTCATGTAACAACAGAGCTGATTTTCTTGGGTCTGATTATTTTGCTTTCAATCTTGACAACGGCAGTTTGGGCGACGAAGTGGCAGAGGCTGGGGTTGTCGGAGTGGTTCGGAAGAGAGGAGCTGGAGTGAGAGAAGCTTCTGGAGCCAAGACTCCTCCTTTGTGTGAAGCTGTTTTGGGGTTTTTGATCACTGCCTTGGAGTTCCCAAGAGCATCTGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

137

Amino Acids

14.46

Weight (kDa)

5.71

Isoelectric Point (pI)

18.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AccII	CGCG	1 cut(s)	138
AccIII	TCCGGA	1 cut(s)	57
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	57, 73
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	3 cut(s)	66, 72, 129
AluBI	AGCT	5 cut(s)	164, 206, 311, 326, 359
AluI	AGCT	5 cut(s)	164, 206, 311, 326, 359
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	2 cut(s)	182, 278
Aor13HI	TCCGGA	1 cut(s)	57
AoxI	GGCC	2 cut(s)	70, 133
ApeKI	GCWGC	2 cut(s)	94, 161
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AspS9I	GGNCC	2 cut(s)	70, 133
AsuC2I	CCSGG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	81, 173
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	3 cut(s)	68, 74, 131
BclI	TGATCA	2 cut(s)	18, 375
BcnI	CCSGG	1 cut(s)	107
BisI	GCNGC	3 cut(s)	95, 136, 162
BlsI	GCNGC	3 cut(s)	96, 137, 163
Bme1390I	CCNGG	4 cut(s)	68, 74, 107, 131
BmgT120I	GGNCC	2 cut(s)	70, 133
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	4 cut(s)	68, 74, 107, 131
BmsI	GCATC	2 cut(s)	135, 410
BpiI	GAAGAC	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	333, 351
BpuMI	CCSGG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	67, 73, 130, 384
BsaWI	WCCGGW	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 73
Bse8I	GATNNNNATC	1 cut(s)	125
BseAI	TCCGGA	1 cut(s)	57
BseBI	CCWGG	3 cut(s)	68, 74, 131
BseDI	CCNNGG	4 cut(s)	67, 73, 130, 384
BseGI	GGATG	2 cut(s)	102, 126
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	2 cut(s)	57, 73
BseRI	GAGGAG	2 cut(s)	321, 333
BseXI	GCAGC	2 cut(s)	81, 173
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	72, 135
BsiSI	CCGG	2 cut(s)	58, 107
BslI	CCNNNNNNNGG	2 cut(s)	57, 73
BsnI	GGCC	2 cut(s)	72, 135
Bsp13I	TCCGGA	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	18, 60, 120, 375
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	2 cut(s)	72, 135
BspEI	TCCGGA	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	68
BssECI	CCNNGG	4 cut(s)	67, 73, 130, 384
BssMI	GATC	4 cut(s)	18, 60, 120, 375
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	3 cut(s)	68, 74, 131
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	296
BstACI	GRCGYC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	102, 126
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	4 cut(s)	21, 63, 123, 378
BstMBI	GATC	4 cut(s)	18, 60, 120, 375
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 167, 258, 332
BstNI	CCWGG	3 cut(s)	68, 74, 131
BstSCI	CCNGG	4 cut(s)	66, 72, 105, 129
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	81, 173
BstV2I	GAAGAC	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	72, 135
BtsCI	GGATG	2 cut(s)	102, 126
BtsI	GCAGTG	2 cut(s)	180, 378
BtsIMutI	CAGTG	2 cut(s)	180, 378
CaiI	CAGNNNCTG	2 cut(s)	182, 278
Cfr13I	GGNCC	2 cut(s)	70, 133
CseI	GACGC	2 cut(s)	56, 127
CviAII	CATG	1 cut(s)	192
CviJI	RGCY	9 cut(s)	72, 135, 164, 206, 278, 311, 326, 335, 359
CviKI_1	RGCY	9 cut(s)	72, 135, 164, 206, 278, 311, 326, 335, 359
DpnI	GATC	4 cut(s)	20, 62, 122, 377
DpnII	GATC	4 cut(s)	18, 60, 120, 375
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	384
EcoRII	CCWGG	3 cut(s)	66, 72, 129
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	195
FaiI	YATR	1 cut(s)	193
FatI	CATG	1 cut(s)	191
FbaI	TGATCA	2 cut(s)	18, 375
Fnu4HI	GCNGC	3 cut(s)	95, 136, 162
FokI	GGATG	2 cut(s)	89, 113
Fsp4HI	GCNGC	3 cut(s)	95, 136, 162
GluI	GCNGC	3 cut(s)	95, 136, 162
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	333, 351
HaeIII	GGCC	2 cut(s)	72, 135
HapII	CCGG	2 cut(s)	58, 107
HgaI	GACGC	2 cut(s)	56, 127
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	2 cut(s)	188, 340
HpaII	CCGG	2 cut(s)	58, 107
Hpy188I	TCNGA	4 cut(s)	46, 223, 290, 300
Hpy188III	TCNNGA	4 cut(s)	16, 58, 242, 330
Hpy99I	CGWCG	2 cut(s)	143, 266
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	115, 126, 161, 170
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 167, 258, 332
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	195
Kpn2I	TCCGGA	1 cut(s)	57
Ksp22I	TGATCA	2 cut(s)	18, 375
Kzo9I	GATC	4 cut(s)	18, 60, 120, 375
LmnI	GCTCC	2 cut(s)	308, 332
Lsp1109I	GCAGC	2 cut(s)	81, 173
LweI	GCATC	2 cut(s)	135, 410
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	7, 194
MalI	GATC	4 cut(s)	20, 62, 122, 377
MboI	GATC	4 cut(s)	18, 60, 120, 375
MboII	GAAGA	2 cut(s)	19, 313
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	5 cut(s)	23, 161, 268, 299, 354
MroI	TCCGGA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	2 cut(s)	58, 107
MspR9I	CCNGG	4 cut(s)	68, 74, 107, 131
MvaI	CCWGG	3 cut(s)	68, 74, 131
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	4 cut(s)	132, 167, 258, 332
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	4 cut(s)	18, 60, 120, 375
NlaIII	CATG	1 cut(s)	195
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	96, 137, 163
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp6I	CCWGG	3 cut(s)	66, 72, 129
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	3 cut(s)	66, 72, 129
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	70, 133
PstNI	CAGNNNCTG	2 cut(s)	182, 278
PvuII	CAGCTG	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	107
SatI	GCNGC	3 cut(s)	95, 136, 162
Sau3AI	GATC	4 cut(s)	18, 60, 120, 375
Sau96I	GGNCC	2 cut(s)	70, 133
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	4 cut(s)	68, 74, 107, 131
SetI	ASST	8 cut(s)	57, 69, 153, 166, 208, 313, 328, 361
SfaNI	GCATC	2 cut(s)	135, 410
SmiMI	CAYNNNNRTG	1 cut(s)	107
SsiI	CCGC	1 cut(s)	136
StyD4I	CCNGG	4 cut(s)	66, 72, 105, 129
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	57
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	188
TscAI	CASTG	2 cut(s)	187, 385
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	94, 161
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	187, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.