RLG00000016602

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
8144413 .. 8145865
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016602

Sequence Viewer

Length: 438 bp
ATGCTCGGCAGGTGTCGGCAGGTGCTCGGCAAGTGTCGGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGTAGCTGCTCGGCAGGTGTCGGCAGGTCTCGGCAGATGCTCGGCAGGTGTCGGCAGGTCTCGGCAGATGCTCGGCAGGTGTCGGCAGGTGTCGACAGGTGTCGGCAGGTGCTCGGCAGGGGCTCGGCAGATGCTCGGCAGCTCTCGGCAGTAACCCGTCCGTGGTCAAAAAGTGGGCCTGAAAAGGTAACACAGAGTTTGGCAGACCTAAGGTTTTGCAAAGAAATAGAAGCCCAAGCGGCCCAGCAGCACCTAAGCTTTGCCGTGATGGTGATCGAAGGGGAAGAAGATTCAGGTTTTGATGTACGAAAGCGAAAACTGCAAGTACAAATGAGATGGATTATGAAGATGGGTGTGAAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.87

Weight (kDa)

10.47

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 8 cut(s) 10, 32, 42, 74, 105, 136, 146, 166
AccI GTMKAC 1 cut(s) 162
AciI CCGC 1 cut(s) 308
AfaI GTAC 2 cut(s) 375, 396
AfiI CCNNNNNNNGG 1 cut(s) 231
AluBI AGCT 3 cut(s) 75, 211, 327
AluI AGCT 3 cut(s) 75, 211, 327
Alw21I GWGCWC 3 cut(s) 27, 59, 183
Alw26I GTCTC 3 cut(s) 71, 102, 133
AoxI GGCC 2 cut(s) 245, 309
ApeKI GCWGC 3 cut(s) 75, 208, 316
AspS9I GGNCC 2 cut(s) 245, 310
AsuHPI GGTGA 1 cut(s) 352
AxyI CCTNAGG 1 cut(s) 278
BanII GRGCYC 1 cut(s) 194
Bbv12I GWGCWC 3 cut(s) 27, 59, 183
BbvI GCAGC 3 cut(s) 62, 220, 328
BccI CCATC 3 cut(s) 331, 399, 412
BceAI ACGGC 1 cut(s) 317
BcoDI GTCTC 3 cut(s) 71, 102, 133
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 4 cut(s) 76, 209, 309, 317
BlsI GCNGC 4 cut(s) 77, 210, 310, 318
BmgT120I GGNCC 2 cut(s) 245, 310
BmsI GCATC 3 cut(s) 96, 127, 190
BoxI GACNNNNGTC 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 341
BsaI GGTCTC 3 cut(s) 71, 102, 133
BsaJI CCNNGG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse21I CCTNAGG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 230
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 231
BseXI GCAGC 3 cut(s) 62, 220, 328
BseYI CCCAGC 1 cut(s) 312
BshFI GGCC 2 cut(s) 247, 311
BsiHKAI GWGCWC 3 cut(s) 27, 59, 183
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 3 cut(s) 71, 102, 133
BsnI GGCC 2 cut(s) 247, 311
Bso31I GGTCTC 3 cut(s) 71, 102, 133
Bsp1286I GDGCHC 4 cut(s) 27, 59, 183, 194
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 1 cut(s) 308
BspANI GGCC 2 cut(s) 247, 311
BspTNI GGTCTC 3 cut(s) 71, 102, 133
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 1 cut(s) 342
BstDEI CTNAG 2 cut(s) 278, 323
BstDSI CCRYGG 1 cut(s) 230
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 3 cut(s) 71, 102, 133
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 2 cut(s) 308, 388
BstPAI GACNNNNGTC 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 62, 220, 328
Bsu36I CCTNAGG 1 cut(s) 278
BsuRI GGCC 2 cut(s) 247, 311
BtgI CCRYGG 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 245, 310
Csp6I GTAC 2 cut(s) 374, 395
CviJI RGCY 7 cut(s) 75, 192, 211, 247, 302, 311, 327
CviKI_1 RGCY 7 cut(s) 75, 192, 211, 247, 302, 311, 327
CviQI GTAC 2 cut(s) 374, 395
DdeI CTNAG 2 cut(s) 278, 323
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 194
Eco31I GGTCTC 3 cut(s) 71, 102, 133
Eco81I CCTNAGG 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 194
FaiI YATR 1 cut(s) 413
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 4 cut(s) 76, 209, 309, 317
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 4 cut(s) 76, 209, 309, 317
GluI GCNGC 4 cut(s) 76, 209, 309, 317
GsaI CCCAGC 1 cut(s) 316
HaeIII GGCC 2 cut(s) 247, 311
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 1 cut(s) 359
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 341
HpyCH4V TGCA 2 cut(s) 288, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 388
HpyF3I CTNAG 2 cut(s) 278, 323
Kzo9I GATC 1 cut(s) 342
Lsp1109I GCAGC 3 cut(s) 62, 220, 328
LweI GCATC 3 cut(s) 96, 127, 190
MaeIII GTNAC 2 cut(s) 220, 256
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 3 cut(s) 365, 368, 427
MhlI GDGCHC 4 cut(s) 27, 59, 183, 194
MwoI GCNNNNNNNGC 2 cut(s) 308, 388
NdeII GATC 1 cut(s) 342
PaqCI CACCTGC 8 cut(s) 10, 32, 42, 74, 105, 136, 146, 166
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 4 cut(s) 77, 210, 310, 318
PshAI GACNNNNGTC 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 245, 310
RsaI GTAC 2 cut(s) 375, 396
RsaNI GTAC 2 cut(s) 374, 395
SalI GTCGAC 1 cut(s) 161
SatI GCNGC 4 cut(s) 76, 209, 309, 317
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 2 cut(s) 245, 310
SduI GDGCHC 4 cut(s) 27, 59, 183, 194
SfaNI GCATC 3 cut(s) 96, 127, 190
SsiI CCGC 1 cut(s) 308
TaqI TCGA 2 cut(s) 162, 345
TatI WGTACW 1 cut(s) 394
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 1 cut(s) 359
TseI GCWGC 3 cut(s) 75, 208, 316
TspDTI ATGAA 1 cut(s) 428
TspGWI ACGGA 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.