RLG00000028457

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001117
Physical Location & Seq
Forward (+)
23038203 .. 23038873
671 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028457

Sequence Viewer

Length: 591 bp
ATGGCCACTGCTAGCCTTCTGGCTAAATGGATCTTACTCCTCGTCACTTTCATTAAACCGACGGTGCTGTGTGGGGGTTCTTTGGAGTTCGGCGACGGTGTATCAAGCCCAAAGCAACGTTTGGTCACTGATAAGGGTGATTATGAGTATGGTACCGATAATCTCAAAATGGTGAAGATCGACGTGATCGAGTTCAGAGGGGGACAGACTGGTGTTGGGGTAATTGCCGACCACTATTCTATTCTGCTTCGATCTGCGCTTGTTGGAGAGGCTAGCGGCTGGGAAGGGCTGCTTTGGTCGGATCTGTCACGGTGCTATGCGGCGGGGACGTATGGCAGAGGAGGGGGTGACCTGGGGTTTGGTGATTGCAGGCCGGCGGATAAGATTGGTCGAGGTGATTCTACTGTTGTTGGTCTAGGTGGTCTGCAATGTCGAGGTCCTCTAGCAGTGGCGCAGTTGTCCGGTGGTGGTGGTCTGGAATTTCATATGAAGACTGTGGTCACCGGAGGAGAAGGGCTCAGTGGCATCTGGGCTTCTAGTGTTAAAGGGTGCAGCGGTACCTCTATTCTTTCCAAAGCTAGGACTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

20.26

Weight (kDa)

6.72

Isoelectric Point (pI)

28.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 152, 557
AccB1I GGYRCC 2 cut(s) 152, 557
AciI CCGC 5 cut(s) 276, 320, 323, 377, 555
AclI AACGTT 1 cut(s) 118
AclWI GGATC 2 cut(s) 38, 309
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 2 cut(s) 154, 559
AfiI CCNNNNNNNGG 1 cut(s) 579
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 1 cut(s) 578
AluI AGCT 1 cut(s) 578
AlwI GGATC 2 cut(s) 38, 309
AoxI GGCC 2 cut(s) 3, 371
ApeKI GCWGC 2 cut(s) 289, 552
ApoI RAATTY 1 cut(s) 479
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
Asp718I GGTACC 2 cut(s) 152, 557
AspLEI GCGC 2 cut(s) 259, 454
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 6 cut(s) 149, 184, 359, 374, 407, 493
AsuNHI GCTAGC 2 cut(s) 11, 272
AvaII GGWCC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 152, 557
BanII GRGCYC 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 497
BbvI GCAGC 2 cut(s) 276, 564
BciT130I CCWGG 1 cut(s) 353
BfaI CTAG 7 cut(s) 12, 273, 416, 443, 537, 579, 589
BisI GCNGC 4 cut(s) 277, 290, 321, 553
BlsI GCNGC 4 cut(s) 278, 291, 322, 554
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 437
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 154, 559
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 1 cut(s) 534
BmtI GCTAGC 2 cut(s) 15, 276
BoxI GACNNNNGTC 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 497
BplI GAGNNNNNCTC 2 cut(s) 501, 533
BsaJI CCNNGG 1 cut(s) 352
BsaWI WCCGGW 2 cut(s) 461, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 579
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 579
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 1 cut(s) 532
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 3 cut(s) 29, 354, 522
BseXI GCAGC 2 cut(s) 276, 564
BseYI CCCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 571
BshFI GGCC 2 cut(s) 5, 373
BshNI GGYRCC 2 cut(s) 152, 557
BsiSI CCGG 3 cut(s) 374, 462, 504
BslFI GGGAC 2 cut(s) 216, 340
BslI CCNNNNNNNGG 1 cut(s) 579
BsmFI GGGAC 2 cut(s) 216, 340
BsnI GGCC 2 cut(s) 5, 373
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 5 cut(s) 30, 177, 186, 251, 301
BspACI CCGC 5 cut(s) 276, 320, 323, 377, 555
BspANI GGCC 2 cut(s) 5, 373
BspCNI CTCAG 1 cut(s) 531
BspLI GGNNCC 2 cut(s) 154, 559
BspOI GCTAGC 2 cut(s) 15, 276
BspPI GGATC 2 cut(s) 38, 309
BspT107I GGYRCC 2 cut(s) 152, 557
BsrDI GCAATG 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 5 cut(s) 30, 177, 186, 251, 301
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 5 cut(s) 64, 98, 312, 406, 496
BstC8I GCNNGC 4 cut(s) 13, 274, 371, 375
BstDEI CTNAG 1 cut(s) 518
BstEII GGTNACC 2 cut(s) 347, 499
BstHHI GCGC 2 cut(s) 259, 454
BstKTI GATC 5 cut(s) 33, 180, 189, 254, 304
BstMBI GATC 5 cut(s) 30, 177, 186, 251, 301
BstNI CCWGG 1 cut(s) 353
BstPAI GACNNNNGTC 1 cut(s) 497
BstPI GGTNACC 2 cut(s) 347, 499
BstSCI CCNGG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 276, 564
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 2 cut(s) 30, 301
BstYI RGATCY 2 cut(s) 30, 301
BsuRI GGCC 2 cut(s) 5, 373
BtrI CACGTC 1 cut(s) 184
BtsI GCAGTG 2 cut(s) 6, 453
BtsIMutI CAGTG 4 cut(s) 6, 126, 453, 526
Cac8I GCNNGC 4 cut(s) 13, 274, 371, 375
CfoI GCGC 2 cut(s) 259, 454
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 2 cut(s) 153, 558
CviQI GTAC 2 cut(s) 153, 558
DdeI CTNAG 1 cut(s) 518
DpnI GATC 5 cut(s) 32, 179, 188, 253, 303
DpnII GATC 5 cut(s) 30, 177, 186, 251, 301
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 437
Eco91I GGTNACC 2 cut(s) 347, 499
EcoO109I RGGNCCY 1 cut(s) 437
EcoO65I GGTNACC 2 cut(s) 347, 499
EcoRII CCWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 519
FaiI YATR 6 cut(s) 144, 150, 318, 333, 486, 488
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 2 cut(s) 216, 340
FauI CCCGC 1 cut(s) 316
FauNDI CATATG 1 cut(s) 486
Fnu4HI GCNGC 4 cut(s) 277, 290, 321, 553
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 4 cut(s) 277, 290, 321, 553
FspBI CTAG 7 cut(s) 12, 273, 416, 443, 537, 579, 589
GlaI GCGC 2 cut(s) 258, 453
GluI GCNGC 4 cut(s) 277, 290, 321, 553
GsaI CCCAGC 1 cut(s) 283
HaeIII GGCC 2 cut(s) 5, 373
HapII CCGG 3 cut(s) 374, 462, 504
HhaI GCGC 2 cut(s) 259, 454
Hin6I GCGC 2 cut(s) 257, 452
HinP1I GCGC 2 cut(s) 257, 452
HinfI GANTC 1 cut(s) 398
HpaII CCGG 3 cut(s) 374, 462, 504
HphI GGTGA 6 cut(s) 149, 184, 359, 374, 407, 493
Hpy188I TCNGA 2 cut(s) 197, 301
Hpy188III TCNNGA 1 cut(s) 476
Hpy99I CGWCG 3 cut(s) 64, 98, 185
HpyAV CCTTC 3 cut(s) 26, 278, 506
HpyCH4III ACNGT 5 cut(s) 64, 98, 312, 406, 496
HpyCH4IV ACGT 3 cut(s) 118, 183, 329
HpyCH4V TGCA 3 cut(s) 369, 427, 552
HpyF3I CTNAG 1 cut(s) 518
HpySE526I ACGT 3 cut(s) 118, 183, 329
HspAI GCGC 2 cut(s) 257, 452
KpnI GGTACC 2 cut(s) 156, 561
KroI GCCGGC 1 cut(s) 373
KroNI GCCGGC 1 cut(s) 375
Kzo9I GATC 5 cut(s) 30, 177, 186, 251, 301
Lsp1109I GCAGC 2 cut(s) 276, 564
LweI GCATC 1 cut(s) 534
MaeI CTAG 7 cut(s) 12, 273, 416, 443, 537, 579, 589
MaeII ACGT 3 cut(s) 118, 183, 329
MaeIII GTNAC 5 cut(s) 43, 124, 306, 347, 499
MalI GATC 5 cut(s) 32, 179, 188, 253, 303
MboI GATC 5 cut(s) 30, 177, 186, 251, 301
MboII GAAGA 2 cut(s) 187, 502
MflI RGATCY 2 cut(s) 30, 301
MhlI GDGCHC 1 cut(s) 519
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 222, 479
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 244, 279
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 373
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 54, 543
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 555
MspI CCGG 3 cut(s) 374, 462, 504
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
NaeI GCCGGC 1 cut(s) 375
NdeI CATATG 1 cut(s) 486
NdeII GATC 5 cut(s) 30, 177, 186, 251, 301
NgoMIV GCCGGC 1 cut(s) 373
NheI GCTAGC 2 cut(s) 11, 272
NlaIV GGNNCC 2 cut(s) 154, 559
NmuCI GTSAC 5 cut(s) 43, 124, 306, 347, 499
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 375
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 4 cut(s) 278, 291, 322, 554
PpuMI RGGWCCY 1 cut(s) 437
PshAI GACNNNNGTC 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 351
PspEI GGTNACC 2 cut(s) 347, 499
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 154, 559
PspPI GGNCC 1 cut(s) 437
PspPPI RGGWCCY 1 cut(s) 437
PsuI RGATCY 2 cut(s) 30, 301
RsaI GTAC 2 cut(s) 154, 559
RsaNI GTAC 2 cut(s) 153, 558
SaqAI TTAA 2 cut(s) 54, 543
SatI GCNGC 4 cut(s) 277, 290, 321, 553
Sau3AI GATC 5 cut(s) 30, 177, 186, 251, 301
Sau96I GGNCC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 519
SetI ASST 9 cut(s) 121, 186, 332, 354, 397, 421, 439, 563, 580
SfaNI GCATC 1 cut(s) 534
SinI GGWCC 1 cut(s) 437
Sse9I AATT 2 cut(s) 222, 479
SsiI CCGC 5 cut(s) 276, 320, 323, 377, 555
SspMI CTAG 7 cut(s) 12, 273, 416, 443, 537, 579, 589
StyD4I CCNGG 1 cut(s) 351
TaaI ACNGT 5 cut(s) 64, 98, 312, 406, 496
TaiI ACGT 3 cut(s) 121, 186, 332
TaqI TCGA 5 cut(s) 180, 189, 250, 391, 433
TasI AATT 2 cut(s) 222, 479
TauI GCSGC 2 cut(s) 279, 323
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 2 cut(s) 54, 543
Tru9I TTAA 2 cut(s) 54, 543
TscAI CASTG 4 cut(s) 13, 133, 453, 526
TseFI GTSAC 5 cut(s) 43, 124, 306, 347, 499
TseI GCWGC 2 cut(s) 289, 552
Tsp45I GTSAC 5 cut(s) 43, 124, 306, 347, 499
TspDTI ATGAA 3 cut(s) 40, 473, 503
TspRI CASTG 4 cut(s) 13, 133, 453, 526
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 1 cut(s) 479
XspI CTAG 7 cut(s) 12, 273, 416, 443, 537, 579, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.