RLG00000002566

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
36451400 .. 36451846
447 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002566

Sequence Viewer

Length: 354 bp
ATGCGGCTCTCTGATGGCTTTCGACCGGGGCTTCTTCGCCTGGATTTGGCGGCTACAAGTGGTGATGGTGATGGCAGCAACAATCTCAAAATGGTGAAGAATGATGGGGTTGGGTTCAGAGGTGGACGGACTGGTGTTGGGTGCTATGCGACGGCGACATATGGCGAAGGAGATGGTGATCTGGATTTTGGTGGCTACAGACCAGCGGACAAGGATGGTCACGATGGTTCTACCGACATTGAGCGAGGTGGTCTGCTATGTCGATGTCGTCTGGCAGCGGTGCAAGTTGCCGGTGGTGGTGATCTGGAATTCCATAGAGAAAGCTATGGGGTGCCCTTAGACTTTCCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.25

Weight (kDa)

4.76

Isoelectric Point (pI)

21.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 331
AciI CCGC 4 cut(s) 4, 50, 206, 278
AcsI RAATTY 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 46
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 324
AluI AGCT 1 cut(s) 324
ApeKI GCWGC 2 cut(s) 75, 275
ApoI RAATTY 1 cut(s) 308
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 5 cut(s) 74, 80, 106, 188, 311
BaeGI GKGCMC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 331
BbvI GCAGC 2 cut(s) 87, 287
BccI CCATC 7 cut(s) 8, 59, 65, 98, 167, 209, 218
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 196
BisI GCNGC 4 cut(s) 5, 51, 76, 276
BlsI GCNGC 4 cut(s) 6, 52, 77, 277
Bme1390I CCNGG 2 cut(s) 27, 41
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 2 cut(s) 27, 41
BpuMI CCSGG 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 46
BseNI ACTGG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 2 cut(s) 87, 287
Bsh1285I CGRYCG 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 26
BsiSI CCGG 2 cut(s) 26, 291
BslI CCNNNNNNNGG 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 178, 301
BspACI CCGC 4 cut(s) 4, 50, 206, 278
BspLI GGNNCC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 178, 301
Bst2UI CCWGG 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 2 cut(s) 181, 304
BstMBI GATC 2 cut(s) 178, 301
BstMCI CGRYCG 1 cut(s) 26
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 25, 39
BstSFI CTRYAG 1 cut(s) 196
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 87, 287
BtsCI GGATG 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 290
CviJI RGCY 6 cut(s) 7, 18, 31, 53, 195, 324
CviKI_1 RGCY 6 cut(s) 7, 18, 31, 53, 195, 324
DdeI CTNAG 1 cut(s) 337
DpnI GATC 2 cut(s) 180, 303
DpnII GATC 2 cut(s) 178, 301
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 39
FaiI YATR 6 cut(s) 147, 160, 162, 259, 315, 327
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 4 cut(s) 5, 51, 76, 276
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 4 cut(s) 5, 51, 76, 276
GluI GCNGC 4 cut(s) 5, 51, 76, 276
HapII CCGG 2 cut(s) 26, 291
HpaII CCGG 2 cut(s) 26, 291
HphI GGTGA 5 cut(s) 74, 80, 106, 188, 311
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 13, 119
Hpy188III TCNNGA 4 cut(s) 182, 221, 305, 347
Hpy8I GTNNAC 1 cut(s) 125
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 337
Kzo9I GATC 2 cut(s) 178, 301
LpnPI CCDG 9 cut(s) 26, 39, 53, 117, 167, 216, 257, 290, 304
Lsp1109I GCAGC 2 cut(s) 87, 287
MaeIII GTNAC 1 cut(s) 218
MalI GATC 2 cut(s) 180, 303
MboI GATC 2 cut(s) 178, 301
MboII GAAGA 2 cut(s) 26, 109
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 1 cut(s) 308
MnlI CCTC 2 cut(s) 113, 239
MspA1I CMGCKG 2 cut(s) 206, 278
MspI CCGG 2 cut(s) 26, 291
MspR9I CCNGG 2 cut(s) 27, 41
MvaI CCWGG 1 cut(s) 41
NciI CCSGG 1 cut(s) 27
NdeI CATATG 1 cut(s) 160
NdeII GATC 2 cut(s) 178, 301
NlaIV GGNNCC 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 6, 52, 77, 277
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 333
SatI GCNGC 4 cut(s) 5, 51, 76, 276
Sau3AI GATC 2 cut(s) 178, 301
ScrFI CCNGG 2 cut(s) 27, 41
SduI GDGCHC 1 cut(s) 336
SetI ASST 3 cut(s) 124, 250, 326
SfcI CTRYAG 1 cut(s) 196
Sse9I AATT 1 cut(s) 308
SsiI CCGC 4 cut(s) 4, 50, 206, 278
StyD4I CCNGG 2 cut(s) 25, 39
TaqI TCGA 2 cut(s) 22, 262
TasI AATT 1 cut(s) 308
TauI GCSGC 2 cut(s) 7, 53
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 2 cut(s) 75, 275
Tsp45I GTSAC 1 cut(s) 218
TspGWI ACGGA 1 cut(s) 142
XapI RAATTY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.