Rh6DG290700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001117
Physical Location & Seq
Reverse (-)
48874272 .. 48874580
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG290700.1

Sequence Viewer

Length: 309 bp
ATGAGGTTTTGTAAGAGGCGATACTGGGAATTTCTTCCTAAGAATATCGAAGGTCCTAGTGTGTTGGGTATTGCCGACAGCGATGGTGATCCACCCCTGGGGTCTCAGGTCAATGCTGATGACTGGGTTAACACAGGAAGAGAATGGCCGGTTCTAATGGTAGGCTACTGGTTTCAATCGGATATGTGGCGTTGCTATATAGCTGCAACGTATGGCGGAGGAGGTGGTGATTTGGCCTTTGGTGGTTGCAGACCGGCTGACAAGGATGATCGCGGTGGCTCTACCATCGTTGGGCGAGGTGGTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.17

Weight (kDa)

4.91

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AciI CCGC 2 cut(s) 216, 273
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 98, 291
AgsI TTSAA 1 cut(s) 176
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 83
AoxI GGCC 2 cut(s) 146, 234
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 98, 239
AvaII GGWCC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 77, 293
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 57
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 98
BmrI ACTGGG 2 cut(s) 34, 133
BmuI ACTGGG 2 cut(s) 34, 133
BsaBI GATNNNNATC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 96, 97
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 291
Bse118I RCCGGY 2 cut(s) 148, 253
Bse1I ACTGG 3 cut(s) 29, 128, 173
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 96, 97
BseGI GGATG 1 cut(s) 271
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 98, 291
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 3 cut(s) 29, 128, 173
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 148, 236
BsiSI CCGG 2 cut(s) 149, 254
BslI CCNNNNNNNGG 2 cut(s) 98, 291
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 2 cut(s) 148, 236
Bso31I GGTCTC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 88, 268
BspACI CCGC 2 cut(s) 216, 273
BspANI GGCC 2 cut(s) 148, 236
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 273
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 108
BsrFI RCCGGY 2 cut(s) 148, 253
BsrI ACTGG 3 cut(s) 29, 128, 173
BssAI RCCGGY 2 cut(s) 148, 253
BssECI CCNNGG 2 cut(s) 96, 97
BssMI GATC 2 cut(s) 88, 268
Bst2UI CCWGG 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 39, 105
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 2 cut(s) 91, 271
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 2 cut(s) 88, 268
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 190
BsuRI GGCC 2 cut(s) 148, 236
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 271
Cfr10I RCCGGY 2 cut(s) 148, 253
Cfr13I GGNCC 1 cut(s) 53
CviJI RGCY 6 cut(s) 148, 165, 203, 236, 257, 279
CviKI_1 RGCY 6 cut(s) 148, 165, 203, 236, 257, 279
DdeI CTNAG 2 cut(s) 39, 105
DpnI GATC 2 cut(s) 90, 270
DpnII GATC 2 cut(s) 88, 268
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 96
FaiI YATR 4 cut(s) 185, 198, 200, 213
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 57
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 2 cut(s) 148, 236
HapII CCGG 2 cut(s) 149, 254
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HpaI GTTAAC 1 cut(s) 130
HpaII CCGG 2 cut(s) 149, 254
HphI GGTGA 2 cut(s) 98, 239
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 206, 249
HpyF3I CTNAG 2 cut(s) 39, 105
HpySE526I ACGT 1 cut(s) 209
KspAI GTTAAC 1 cut(s) 130
Kzo9I GATC 2 cut(s) 88, 268
LpnPI CCDG 9 cut(s) 10, 83, 92, 109, 110, 120, 154, 162, 267
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 209
MalI GATC 2 cut(s) 90, 270
MboI GATC 2 cut(s) 88, 268
MboII GAAGA 2 cut(s) 26, 150
MluCI AATT 1 cut(s) 29
MnlI CCTC 4 cut(s) 9, 212, 215, 290
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 1 cut(s) 129
MspI CCGG 2 cut(s) 149, 254
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 1 cut(s) 273
NdeII GATC 2 cut(s) 88, 268
PasI CCCWGGG 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 33
PkrI GCNGC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 88, 268
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 98
SetI ASST 7 cut(s) 8, 55, 111, 205, 212, 226, 301
SinI GGWCC 1 cut(s) 53
Sse9I AATT 1 cut(s) 29
SsiI CCGC 2 cut(s) 216, 273
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 96
TaiI ACGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 29
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseI GCWGC 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.