RLG00000002750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001117
Physical Location & Seq
Reverse (-)
39106482 .. 39108396
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002750

Sequence Viewer

Length: 636 bp
ATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGACGTCGGCAGCTATCGGCAGGTGTGTGCAGGGCTGTCGGCAGCTTCTCGGCAGGGGCCTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGCTTGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGGCAGGTGTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGGCAGATCCGGCCACCCACCCCGACTCGTACCTCGACTTGGATCAAACAAAACACAGGCCGCCGCCTCCTCGCCGCTAATGAACAAACCCCGGATCACTGGTCAAAACATCGCTCAAAAGCACAAAGCCCTGACGCAACCCCCGCTGCCGAGAAGGATCACTTCGCTCCCTCCGGTCTACACCCTCAACCGCAGCAGCCTAAACCACTGCCGATCGAAGCCGTCTCAAACTTTCTGTCAAAATACCGATCTGGAAACTACTCCGCCGACAAAGCCAAAGGACAGCAGCGCCGCTCCTTCTTCTCGCCGTCGTTGTCCCGTCGCCGCCTGGTCTGGGGACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.02

Weight (kDa)

11.71

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 585
AccI GTMKAC 1 cut(s) 469
AciI CCGC 8 cut(s) 352, 355, 366, 435, 482, 555, 583, 616
AclWI GGATC 4 cut(s) 292, 341, 393, 456
AcoI YGGCCR 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 330, 625
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 3 cut(s) 44, 76, 120
AluI AGCT 3 cut(s) 44, 76, 120
Alw21I GWGCWC 5 cut(s) 156, 177, 229, 250, 281
Alw26I GTCTC 2 cut(s) 241, 520
AlwI GGATC 4 cut(s) 292, 341, 393, 456
AoxI GGCC 4 cut(s) 23, 88, 302, 349
ApeKI GCWGC 7 cut(s) 41, 73, 117, 437, 484, 487, 577
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 3 cut(s) 23, 88, 629
AsuC2I CCSGG 1 cut(s) 383
AvaII GGWCC 1 cut(s) 629
Bbv12I GWGCWC 5 cut(s) 156, 177, 229, 250, 281
BbvI GCAGC 7 cut(s) 53, 85, 129, 424, 496, 499, 589
BceAI ACGGC 2 cut(s) 497, 583
BcgI CGANNNNNNTGC 7 cut(s) 8, 30, 42, 50, 73, 84, 107
BciT130I CCWGG 1 cut(s) 620
BcnI CCSGG 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 241, 520
BfaI CTAG 1 cut(s) 113
BfoI RGCGCY 1 cut(s) 583
Bme1390I CCNGG 2 cut(s) 383, 620
Bme18I GGWCC 1 cut(s) 629
BmgT120I GGNCC 3 cut(s) 23, 88, 629
BmiI GGNNCC 3 cut(s) 24, 89, 630
BmrFI CCNGG 2 cut(s) 383, 620
BpuMI CCSGG 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 3 cut(s) 26, 91, 381
BsaWI WCCGGW 1 cut(s) 464
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 625
Bse1I ACTGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 3 cut(s) 26, 91, 381
BseLI CCNNNNNNNGG 2 cut(s) 330, 625
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 7 cut(s) 53, 85, 129, 424, 496, 499, 589
BsgI GTGCAG 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 4 cut(s) 25, 90, 304, 351
BsiEI CGRYCG 1 cut(s) 507
BsiHKAI GWGCWC 5 cut(s) 156, 177, 229, 250, 281
BsiSI CCGG 3 cut(s) 301, 383, 465
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 2 cut(s) 330, 625
BsmAI GTCTC 2 cut(s) 241, 520
BsmBI CGTCTC 1 cut(s) 520
BsmFI GGGAC 1 cut(s) 592
BsnI GGCC 4 cut(s) 25, 90, 304, 351
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 5 cut(s) 156, 177, 229, 250, 281
Bsp143I GATC 6 cut(s) 297, 333, 385, 448, 504, 539
BspACI CCGC 8 cut(s) 352, 355, 366, 435, 482, 555, 583, 616
BspANI GGCC 4 cut(s) 25, 90, 304, 351
BspLI GGNNCC 3 cut(s) 24, 89, 630
BspPI GGATC 4 cut(s) 292, 341, 393, 456
BspTNI GGTCTC 1 cut(s) 241
BsrBI CCGCTC 1 cut(s) 585
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 3 cut(s) 26, 91, 381
BssMI GATC 6 cut(s) 297, 333, 385, 448, 504, 539
BssNI GRCGYC 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 1 cut(s) 633
BstACI GRCGYC 1 cut(s) 35
BstH2I RGCGCY 1 cut(s) 583
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 6 cut(s) 300, 336, 388, 451, 507, 542
BstMAI GTCTC 2 cut(s) 241, 520
BstMBI GATC 6 cut(s) 297, 333, 385, 448, 504, 539
BstMCI CGRYCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 3 cut(s) 301, 434, 563
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 381, 618
BstV1I GCAGC 7 cut(s) 53, 85, 129, 424, 496, 499, 589
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuRI GGCC 4 cut(s) 25, 90, 304, 351
BtgZI GCGATG 1 cut(s) 386
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 2 cut(s) 388, 497
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 3 cut(s) 23, 88, 629
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 321
CviQI GTAC 1 cut(s) 321
DpnI GATC 6 cut(s) 299, 335, 387, 450, 506, 541
DpnII GATC 6 cut(s) 297, 333, 385, 448, 504, 539
EaeI YGGCCR 1 cut(s) 302
EciI GGCGGA 1 cut(s) 544
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 629
EcoO109I RGGNCCY 2 cut(s) 23, 88
EcoRII CCWGG 1 cut(s) 618
Esp3I CGTCTC 1 cut(s) 520
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 592
FauI CCCGC 1 cut(s) 442
FblI GTMKAC 1 cut(s) 469
FspBI CTAG 1 cut(s) 113
GlaI GCGC 1 cut(s) 581
HaeII RGCGCY 1 cut(s) 583
HaeIII GGCC 4 cut(s) 25, 90, 304, 351
HapII CCGG 3 cut(s) 301, 383, 465
HgaI GACGC 1 cut(s) 434
HhaI GCGC 1 cut(s) 582
Hin1I GRCGYC 1 cut(s) 35
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HinfI GANTC 1 cut(s) 316
HpaII CCGG 3 cut(s) 301, 383, 465
Hpy166II GTNNAC 1 cut(s) 470
Hpy188III TCNNGA 1 cut(s) 543
Hpy8I GTNNAC 1 cut(s) 470
Hpy99I CGWCG 3 cut(s) 40, 604, 615
HpyAV CCTTC 2 cut(s) 439, 598
HpyCH4III ACNGT 1 cut(s) 633
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 434, 563
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 35
HspAI GCGC 1 cut(s) 580
Kzo9I GATC 6 cut(s) 297, 333, 385, 448, 504, 539
LmnI GCTCC 2 cut(s) 463, 590
Lsp1109I GCAGC 7 cut(s) 53, 85, 129, 424, 496, 499, 589
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 35
MalI GATC 6 cut(s) 299, 335, 387, 450, 506, 541
MbiI CCGCTC 1 cut(s) 585
MboI GATC 6 cut(s) 297, 333, 385, 448, 504, 539
MboII GAAGA 1 cut(s) 583
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 5 cut(s) 156, 177, 229, 250, 281
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 7 cut(s) 36, 101, 334, 368, 371, 472, 486
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 3 cut(s) 301, 383, 465
MspR9I CCNGG 2 cut(s) 383, 620
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 3 cut(s) 301, 434, 563
NciI CCSGG 1 cut(s) 383
NdeII GATC 6 cut(s) 297, 333, 385, 448, 504, 539
NlaIV GGNNCC 3 cut(s) 24, 89, 630
Ple19I CGATCG 1 cut(s) 507
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 618
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 3 cut(s) 24, 89, 630
PspPI GGNCC 3 cut(s) 23, 88, 629
PsuI RGATCY 1 cut(s) 297
PvuI CGATCG 1 cut(s) 507
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
Sau3AI GATC 6 cut(s) 297, 333, 385, 448, 504, 539
Sau96I GGNCC 3 cut(s) 23, 88, 629
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 383, 620
SduI GDGCHC 5 cut(s) 156, 177, 229, 250, 281
SinI GGWCC 1 cut(s) 629
SsiI CCGC 8 cut(s) 352, 355, 366, 435, 482, 555, 583, 616
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 381, 618
TaaI ACNGT 1 cut(s) 633
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 326, 507
TauI GCSGC 5 cut(s) 354, 357, 368, 585, 618
TscAI CASTG 2 cut(s) 395, 504
TseI GCWGC 7 cut(s) 41, 73, 117, 437, 484, 487, 577
TspDTI ATGAA 1 cut(s) 387
TspRI CASTG 2 cut(s) 395, 504
VpaK11BI GGWCC 1 cut(s) 629
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 1 cut(s) 113
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.