RLG00000021025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001117
Physical Location & Seq
Forward (+)
71172029 .. 71174146
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021025

Sequence Viewer

Length: 825 bp
ATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGGCGTCGGCAGCTATCGGTAGGTGTGTGCAGGGCTGTCGGCAGCTTCTCGGTAGGGGCCTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGCTCGGCAGGTGTCGACAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGCTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGAGACGGTGTATCAAGCCCAGAGCAACGTTTGGTTGCAGACAAGGGTTGGTGGCTCGCGAAGACTCTGCGGCAATCTCAAAATGGGGTTGAGTTCAAAGGTGGACAGACTGGTGTTGGGGTGATTGCCGACAACTGTACTGTACTGCTTCGATCTGTGTTCGTTGGAGAGGCTAACGGCTGGGAACGGCTACTTCTGTCAGATCTCTGGCCGTGCTATGCGGTTGCAACGTATGGCGGAGGAGATAGGGATCTGGAATTTGGTGGATGCAGACCGGCCGATAAGGATGGTAACGGTTTTTCTATCGGCGTTGGGCTAGGTGGTCTGCGATGTCGATGTCCTTTGGCAGTGGGCCATGTTGCCGGTGGTGATGGTCTAAAATTCCATGGAGAAAGCTATGGGGTGCCTTTAGCATTTCTTCATTGGGTGCCCTTAGGGTTTCCATACCTTGGGCTAGTTGGACCAGGCTTGCTTTGGATGGTGATCTGGATGTCGTGGGCTCGGCCAGAATTGGAAGGGGAGTATGCTACTTCTCTTCCGAAAACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

29.02

Weight (kDa)

9.52

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 676, 700
AccB7I CCANNNNNTGG 1 cut(s) 722
AccI GTMKAC 1 cut(s) 145
AccII CGCG 1 cut(s) 332
AciI CCGC 3 cut(s) 343, 494, 510
AclI AACGTT 1 cut(s) 301
AclWI GGATC 1 cut(s) 531
AcoI YGGCCR 3 cut(s) 482, 549, 776
AcsI RAATTY 2 cut(s) 530, 653
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 2 cut(s) 412, 417
AfiI CCNNNNNNNGG 1 cut(s) 722
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 1 cut(s) 736
AluBI AGCT 4 cut(s) 44, 76, 120, 669
AluI AGCT 4 cut(s) 44, 76, 120, 669
Alw21I GWGCWC 6 cut(s) 135, 176, 187, 208, 219, 260
Alw26I GTCTC 3 cut(s) 199, 270, 272
AlwI GGATC 1 cut(s) 531
AoxI GGCC 6 cut(s) 23, 88, 482, 549, 625, 776
ApeKI GCWGC 3 cut(s) 41, 73, 117
ApoI RAATTY 2 cut(s) 530, 653
AspS9I GGNCC 4 cut(s) 23, 88, 625, 734
AsuHPI GGTGA 3 cut(s) 406, 653, 766
AvaII GGWCC 1 cut(s) 734
AxyI CCTNAGG 1 cut(s) 706
BaeGI GKGCMC 1 cut(s) 705
BanI GGYRCC 2 cut(s) 676, 700
BanII GRGCYC 1 cut(s) 775
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 6 cut(s) 135, 176, 187, 208, 219, 260
BbvI GCAGC 3 cut(s) 53, 85, 129
BccI CCATC 3 cut(s) 554, 638, 745
BceAI ACGGC 3 cut(s) 466, 469, 476
BcgI CGANNNNNNTGC 7 cut(s) 8, 30, 42, 50, 84, 322, 356
BciT130I CCWGG 1 cut(s) 738
BcoDI GTCTC 3 cut(s) 199, 270, 272
BfaI CTAG 3 cut(s) 113, 590, 728
BglII AGATCT 1 cut(s) 475
BisI GCNGC 4 cut(s) 42, 74, 118, 344
BlsI GCNGC 4 cut(s) 43, 75, 119, 345
Bme1390I CCNGG 1 cut(s) 738
Bme18I GGWCC 1 cut(s) 734
BmgT120I GGNCC 4 cut(s) 23, 88, 625, 734
BmiI GGNNCC 4 cut(s) 24, 89, 678, 702
BmrFI CCNGG 1 cut(s) 738
BmsI GCATC 1 cut(s) 530
BoxI GACNNNNGTC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 341
BsaBI GATNNNNATC 2 cut(s) 522, 755
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 2 cut(s) 199, 272
BsaJI CCNNGG 4 cut(s) 26, 91, 658, 721
Bsc4I CCNNNNNNNGG 1 cut(s) 722
Bse118I RCCGGY 2 cut(s) 547, 635
Bse1I ACTGG 1 cut(s) 388
Bse21I CCTNAGG 1 cut(s) 706
Bse8I GATNNNNATC 2 cut(s) 522, 755
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 4 cut(s) 26, 91, 658, 721
BseGI GGATG 4 cut(s) 545, 565, 756, 768
BseJI GATNNNNATC 2 cut(s) 522, 755
BseLI CCNNNNNNNGG 1 cut(s) 722
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 528
BseSI GKGCMC 1 cut(s) 705
BseX3I CGGCCG 1 cut(s) 549
BseXI GCAGC 3 cut(s) 53, 85, 129
BseYI CCCAGC 1 cut(s) 453
BsgI GTGCAG 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 332
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 6 cut(s) 25, 90, 484, 551, 627, 778
BshNI GGYRCC 2 cut(s) 676, 700
BsiEI CGRYCG 1 cut(s) 552
BsiHKAI GWGCWC 6 cut(s) 135, 176, 187, 208, 219, 260
BsiSI CCGG 2 cut(s) 548, 636
BslI CCNNNNNNNGG 1 cut(s) 722
BsmAI GTCTC 3 cut(s) 199, 270, 272
BsmBI CGTCTC 1 cut(s) 270
BsnI GGCC 6 cut(s) 25, 90, 484, 551, 627, 778
Bso31I GGTCTC 2 cut(s) 199, 272
Bsp1286I GDGCHC 8 cut(s) 135, 176, 187, 208, 219, 260, 705, 775
Bsp143I GATC 4 cut(s) 425, 475, 523, 756
Bsp19I CCATGG 1 cut(s) 658
Bsp68I TCGCGA 1 cut(s) 332
BspACI CCGC 3 cut(s) 343, 494, 510
BspANI GGCC 6 cut(s) 25, 90, 484, 551, 627, 778
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 4 cut(s) 24, 89, 678, 702
BspPI GGATC 1 cut(s) 531
BspT107I GGYRCC 2 cut(s) 676, 700
BspTNI GGTCTC 2 cut(s) 199, 272
BsrFI RCCGGY 2 cut(s) 547, 635
BsrI ACTGG 1 cut(s) 388
BssAI RCCGGY 2 cut(s) 547, 635
BssECI CCNNGG 4 cut(s) 26, 91, 658, 721
BssMI GATC 4 cut(s) 425, 475, 523, 756
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 2 cut(s) 658, 721
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 4 cut(s) 281, 410, 415, 569
Bst6I CTCTTC 1 cut(s) 813
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 3 cut(s) 33, 330, 743
BstDEI CTNAG 1 cut(s) 706
BstDSI CCRYGG 1 cut(s) 658
BstF5I GGATG 4 cut(s) 545, 565, 756, 768
BstFNI CGCG 1 cut(s) 332
BstKTI GATC 4 cut(s) 428, 478, 526, 759
BstMAI GTCTC 3 cut(s) 199, 270, 272
BstMBI GATC 4 cut(s) 425, 475, 523, 756
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 738
BstPAI GACNNNNGTC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 736
BstSLI GKGCMC 1 cut(s) 705
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 3 cut(s) 53, 85, 129
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 2 cut(s) 475, 523
BstYI RGATCY 2 cut(s) 475, 523
BstZI CGGCCG 1 cut(s) 549
Bsu36I CCTNAGG 1 cut(s) 706
BsuRI GGCC 6 cut(s) 25, 90, 484, 551, 627, 778
BtgI CCRYGG 1 cut(s) 658
BtgZI GCGATG 1 cut(s) 616
BtsCI GGATG 4 cut(s) 545, 565, 756, 768
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 1 cut(s) 627
BtuMI TCGCGA 1 cut(s) 332
Cac8I GCNNGC 3 cut(s) 33, 330, 743
Cfr10I RCCGGY 2 cut(s) 547, 635
Cfr13I GGNCC 4 cut(s) 23, 88, 625, 734
CseI GACGC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 411, 416
CviAII CATG 2 cut(s) 629, 659
CviQI GTAC 2 cut(s) 411, 416
DdeI CTNAG 1 cut(s) 706
DpnI GATC 4 cut(s) 427, 477, 525, 758
DpnII GATC 4 cut(s) 425, 475, 523, 756
EaeI YGGCCR 3 cut(s) 482, 549, 776
EagI CGGCCG 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
EciI GGCGGA 1 cut(s) 525
EclXI CGGCCG 1 cut(s) 549
Eco130I CCWWGG 2 cut(s) 658, 721
Eco24I GRGCYC 1 cut(s) 775
Eco31I GGTCTC 2 cut(s) 199, 272
Eco47I GGWCC 1 cut(s) 734
Eco52I CGGCCG 1 cut(s) 549
Eco81I CCTNAGG 1 cut(s) 706
EcoO109I RGGNCCY 2 cut(s) 23, 88
EcoRII CCWGG 1 cut(s) 736
EcoT14I CCWWGG 2 cut(s) 658, 721
EcoT38I GRGCYC 1 cut(s) 775
ErhI CCWWGG 2 cut(s) 658, 721
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 2 cut(s) 632, 662
FaiI YATR 7 cut(s) 492, 507, 630, 660, 672, 718, 798
FatI CATG 2 cut(s) 628, 658
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 42, 74, 118, 344
FokI GGATG 4 cut(s) 552, 572, 763, 775
FriOI GRGCYC 1 cut(s) 775
Fsp4HI GCNGC 4 cut(s) 42, 74, 118, 344
FspBI CTAG 3 cut(s) 113, 590, 728
GluI GCNGC 4 cut(s) 42, 74, 118, 344
GsaI CCCAGC 1 cut(s) 457
HaeIII GGCC 6 cut(s) 25, 90, 484, 551, 627, 778
HapII CCGG 2 cut(s) 548, 636
HgaI GACGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 2 cut(s) 632, 662
HincII GTYRAC 1 cut(s) 146
HindII GTYRAC 1 cut(s) 146
HinfI GANTC 1 cut(s) 337
HpaII CCGG 2 cut(s) 548, 636
HphI GGTGA 3 cut(s) 406, 653, 766
Hpy166II GTNNAC 2 cut(s) 146, 377
Hpy188I TCNGA 2 cut(s) 475, 813
Hpy188III TCNNGA 3 cut(s) 331, 527, 760
Hpy8I GTNNAC 2 cut(s) 146, 377
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 782
HpyCH4III ACNGT 4 cut(s) 281, 410, 415, 569
HpyCH4IV ACGT 2 cut(s) 301, 503
HpyCH4V TGCA 4 cut(s) 61, 311, 500, 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 706
HpySE526I ACGT 2 cut(s) 301, 503
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 632, 662
Kzo9I GATC 4 cut(s) 425, 475, 523, 756
Lsp1109I GCAGC 3 cut(s) 53, 85, 129
LweI GCATC 1 cut(s) 530
MaeI CTAG 3 cut(s) 113, 590, 728
MaeII ACGT 2 cut(s) 301, 503
MaeIII GTNAC 1 cut(s) 563
MalI GATC 4 cut(s) 427, 477, 525, 758
MboI GATC 4 cut(s) 425, 475, 523, 756
MboII GAAGA 3 cut(s) 346, 683, 800
MflI RGATCY 2 cut(s) 475, 523
MhlI GDGCHC 8 cut(s) 135, 176, 187, 208, 219, 260, 705, 775
MluCI AATT 3 cut(s) 530, 653, 782
MlyI GAGTC 1 cut(s) 331
MmeI TCCRAC 2 cut(s) 418, 712
MnlI CCTC 4 cut(s) 36, 101, 436, 506
MseI TTAA 1 cut(s) 823
MspI CCGG 2 cut(s) 548, 636
MspR9I CCNGG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 738
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 41
NcoI CCATGG 1 cut(s) 658
NdeII GATC 4 cut(s) 425, 475, 523, 756
NlaIII CATG 2 cut(s) 632, 662
NlaIV GGNNCC 4 cut(s) 24, 89, 678, 702
NruI TCGCGA 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 722
PkrI GCNGC 4 cut(s) 43, 75, 119, 345
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PshAI GACNNNNGTC 1 cut(s) 151
Psp1406I AACGTT 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 736
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 4 cut(s) 24, 89, 678, 702
PspPI GGNCC 4 cut(s) 23, 88, 625, 734
PsuI RGATCY 2 cut(s) 475, 523
RruI TCGCGA 1 cut(s) 332
RsaI GTAC 2 cut(s) 412, 417
RsaNI GTAC 2 cut(s) 411, 416
SalI GTCGAC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 823
SatI GCNGC 4 cut(s) 42, 74, 118, 344
Sau3AI GATC 4 cut(s) 425, 475, 523, 756
Sau96I GGNCC 4 cut(s) 23, 88, 625, 734
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 738
SduI GDGCHC 8 cut(s) 135, 176, 187, 208, 219, 260, 705, 775
SfaNI GCATC 1 cut(s) 530
SinI GGWCC 1 cut(s) 734
Sse9I AATT 3 cut(s) 530, 653, 782
SsiI CCGC 3 cut(s) 343, 494, 510
SspMI CTAG 3 cut(s) 113, 590, 728
StyD4I CCNGG 1 cut(s) 736
StyI CCWWGG 2 cut(s) 658, 721
TaaI ACNGT 4 cut(s) 281, 410, 415, 569
TaiI ACGT 2 cut(s) 304, 506
TaqI TCGA 3 cut(s) 145, 424, 607
TasI AATT 3 cut(s) 530, 653, 782
TatI WGTACW 2 cut(s) 410, 415
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 823
Tru9I TTAA 1 cut(s) 823
TscAI CASTG 1 cut(s) 627
TseI GCWGC 3 cut(s) 41, 73, 117
TspDTI ATGAA 1 cut(s) 683
TspRI CASTG 1 cut(s) 627
Van91I CCANNNNNTGG 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 734
XapI RAATTY 2 cut(s) 530, 653
XcmI CCANNNNNNNNNTGG 2 cut(s) 635, 744
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 3 cut(s) 113, 590, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.