Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Reverse (-)

15920638 .. 15923484

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCGCAGGGCTGTCAGCAGCTTCTTGGTAGGGGCCTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAAGTCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGCTCGGCAGGTGCTCGGCAGGTGTCGGGCAGGTGTCGGGCTGGTGCTCGGCGGGTCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGTCGGCAGGTCTCGGCAGATCACTGCCCCCAAGCCAGCATGATCTGCCTGCACCCACCCTCAATCGCCTTAGTCAAAACTACCGCGAGTCGGGGCCCTTACTAACTCAGACTTCCGTCGAGCAAGACCTGCCGGAACCAACGCTGTCAACGAACCAAGAAGACACCACTGCCTCTCCGTATCCTCACCCCCGCTATCCCGTCATCGTCTGGTTTGGGGACACTGAGATCACCAAGGTTGCTCCTGATTCTCCAGAGGCCTCCTGCTCAATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

21.58

Weight (kDa)

10.11

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	414
AciI	CCGC	3 cut(s)	284, 412, 520
AfiI	CCNNNNNNNGG	1 cut(s)	418
AluBI	AGCT	3 cut(s)	22, 66, 150
AluI	AGCT	3 cut(s)	22, 66, 150
Alw21I	GWGCWC	9 cut(s)	81, 112, 133, 185, 216, 237, 248, 281, 312
Alw26I	GTCTC	5 cut(s)	197, 228, 293, 324, 344
AoxI	GGCC	3 cut(s)	34, 422, 585
ApaI	GGGCCC	1 cut(s)	426
ApeKI	GCWGC	3 cut(s)	19, 63, 147
AspS9I	GGNCC	3 cut(s)	34, 422, 423
AsuHPI	GGTGA	2 cut(s)	506, 550
BaeGI	GKGCMC	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	9 cut(s)	81, 112, 133, 185, 216, 237, 248, 281, 312
BbvI	GCAGC	3 cut(s)	31, 75, 159
BciVI	GTATCC	1 cut(s)	519
BcoDI	GTCTC	5 cut(s)	197, 228, 293, 324, 344
BfaI	CTAG	2 cut(s)	59, 143
BfuI	GTATCC	1 cut(s)	519
BisI	GCNGC	3 cut(s)	20, 64, 148
BlsI	GCNGC	3 cut(s)	21, 65, 149
BmgT120I	GGNCC	3 cut(s)	34, 422, 423
BmiI	GGNNCC	4 cut(s)	35, 423, 424, 465
BoxI	GACNNNNGTC	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	564
BsaI	GGTCTC	4 cut(s)	228, 293, 324, 344
BsaJI	CCNNGG	2 cut(s)	37, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	37, 561
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	449, 543
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	3 cut(s)	31, 75, 159
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	36, 424, 587
BsiHKAI	GWGCWC	9 cut(s)	81, 112, 133, 185, 216, 237, 248, 281, 312
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	5 cut(s)	197, 228, 293, 324, 344
BsmFI	GGGAC	1 cut(s)	560
BsnI	GGCC	3 cut(s)	36, 424, 587
Bso31I	GGTCTC	4 cut(s)	228, 293, 324, 344
Bsp120I	GGGCCC	1 cut(s)	422
Bsp143I	GATC	3 cut(s)	347, 370, 555
BspACI	CCGC	3 cut(s)	284, 412, 520
BspANI	GGCC	3 cut(s)	36, 424, 587
BspCNI	CTCAG	2 cut(s)	448, 544
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	4 cut(s)	35, 423, 424, 465
BspTNI	GGTCTC	4 cut(s)	228, 293, 324, 344
BssECI	CCNNGG	2 cut(s)	37, 561
BssMI	GATC	3 cut(s)	347, 370, 555
BssT1I	CCWWGG	1 cut(s)	561
BstAPI	GCANNNNNTGC	2 cut(s)	373, 457
BstC8I	GCNNGC	2 cut(s)	365, 378
BstDEI	CTNAG	3 cut(s)	398, 435, 552
BstFNI	CGCG	1 cut(s)	414
BstKTI	GATC	3 cut(s)	350, 373, 558
BstMAI	GTCTC	5 cut(s)	197, 228, 293, 324, 344
BstMBI	GATC	3 cut(s)	347, 370, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 457
BstPAI	GACNNNNGTC	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	426
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	31, 75, 159
BstV2I	GAAGAC	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	3 cut(s)	36, 424, 587
BtsI	GCAGTG	2 cut(s)	350, 495
BtsIMutI	CAGTG	3 cut(s)	350, 495, 549
Cac8I	GCNNGC	2 cut(s)	365, 378
Cfr13I	GGNCC	3 cut(s)	34, 422, 423
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	9 cut(s)	12, 22, 36, 66, 150, 273, 363, 424, 587
CviKI_1	RGCY	9 cut(s)	12, 22, 36, 66, 150, 273, 363, 424, 587
DdeI	CTNAG	3 cut(s)	398, 435, 552
DpnI	GATC	3 cut(s)	349, 372, 557
DpnII	GATC	3 cut(s)	347, 370, 555
Eco130I	CCWWGG	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	426
Eco31I	GGTCTC	4 cut(s)	228, 293, 324, 344
EcoO109I	RGGNCCY	3 cut(s)	34, 422, 423
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	1 cut(s)	371
FaiI	YATR	1 cut(s)	369
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	1 cut(s)	367
FauI	CCCGC	2 cut(s)	277, 527
Fnu4HI	GCNGC	3 cut(s)	20, 64, 148
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	3 cut(s)	20, 64, 148
FspBI	CTAG	2 cut(s)	59, 143
GluI	GCNGC	3 cut(s)	20, 64, 148
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	36, 424, 587
HapII	CCGG	1 cut(s)	461
Hin1II	CATG	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	2 cut(s)	416, 575
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	2 cut(s)	506, 550
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	2 cut(s)	572, 581
Hpy8I	GTNNAC	1 cut(s)	477
Hpy99I	CGWCG	1 cut(s)	449
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 457
HpyF3I	CTNAG	3 cut(s)	398, 435, 552
Hsp92II	CATG	1 cut(s)	371
Kzo9I	GATC	3 cut(s)	347, 370, 555
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	3 cut(s)	31, 75, 159
MaeI	CTAG	2 cut(s)	59, 143
MalI	GATC	3 cut(s)	349, 372, 557
MboI	GATC	3 cut(s)	347, 370, 555
MboII	GAAGA	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	425
MnlI	CCTC	6 cut(s)	47, 398, 511, 522, 577, 598
MspI	CCGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	373, 457
NdeII	GATC	3 cut(s)	347, 370, 555
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	4 cut(s)	35, 423, 424, 465
PceI	AGGCCT	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	21, 65, 149
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PshAI	GACNNNNGTC	1 cut(s)	443
PspN4I	GGNNCC	4 cut(s)	35, 423, 424, 465
PspOMI	GGGCCC	1 cut(s)	422
PspPI	GGNCC	3 cut(s)	34, 422, 423
SatI	GCNGC	3 cut(s)	20, 64, 148
Sau3AI	GATC	3 cut(s)	347, 370, 555
Sau96I	GGNCC	3 cut(s)	34, 422, 423
SchI	GAGTC	1 cut(s)	425
SseBI	AGGCCT	1 cut(s)	587
SsiI	CCGC	3 cut(s)	284, 412, 520
SspMI	CTAG	2 cut(s)	59, 143
StuI	AGGCCT	1 cut(s)	587
StyI	CCWWGG	1 cut(s)	561
TaqI	TCGA	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	575
TscAI	CASTG	3 cut(s)	357, 502, 556
TseI	GCWGC	3 cut(s)	19, 63, 147
TspGWI	ACGGA	2 cut(s)	433, 495
TspRI	CASTG	3 cut(s)	357, 502, 556
XspI	CTAG	2 cut(s)	59, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.