Rh3DG277200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
28082151 .. 28082468
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG277200.1

Sequence Viewer

Length: 318 bp
ATGGCTTTCGACCGGGGCTTCTTGGCTTGGATTTGGCTGCTACCAGGTGGTAATGATGTTGGTAGTGGTAATCTCAAAATGGTGAAGAACAAGTTCAGAGGTGGATGGACTGGTGTTGGGGTGATTGCAGACAATTGTACTGGTCTATTTCAATATGTGTTTGTTGGAGAGGCTGACGACTGGGAAGGGCTGCTTCGGTCGGATCTGTGGCTGTGCTATGCGGCGGCGACGTATGGCGGAGGAGGTAGTGATTTGGAATTTGGTGGTTGCAGACCGGCGGATAAGGATGGTTGTGGTGGTTTTACCATCATTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.15

Weight (kDa)

4.48

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 221, 224, 237, 278
AclWI GGATC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 1 cut(s) 43
AlwI GGATC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 37, 190
ApoI RAATTY 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 94, 133
BbvI GCAGC 2 cut(s) 24, 177
BccI CCATC 3 cut(s) 99, 281, 314
BciT130I CCWGG 1 cut(s) 45
BcnI CCSGG 1 cut(s) 14
BisI GCNGC 4 cut(s) 38, 191, 222, 225
BlsI GCNGC 4 cut(s) 39, 192, 223, 226
Bme1390I CCNGG 2 cut(s) 14, 45
BmrFI CCNGG 2 cut(s) 14, 45
BmrI ACTGGG 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 190
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 3 cut(s) 115, 145, 185
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 2 cut(s) 110, 292
BseLI CCNNNNNNNGG 1 cut(s) 312
BseNI ACTGG 3 cut(s) 115, 145, 185
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 24, 177
Bsh1285I CGRYCG 2 cut(s) 13, 200
BsiEI CGRYCG 2 cut(s) 13, 200
BsiSI CCGG 2 cut(s) 13, 275
BslI CCNNNNNNNGG 1 cut(s) 312
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 4 cut(s) 221, 224, 237, 278
BspPI GGATC 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 3 cut(s) 115, 145, 185
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 110, 292
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMCI CGRYCG 2 cut(s) 13, 200
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 2 cut(s) 12, 43
BstV1I GCAGC 2 cut(s) 24, 177
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BtsCI GGATG 2 cut(s) 110, 292
Cfr10I RCCGGY 1 cut(s) 274
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 1 cut(s) 138
CviJI RGCY 7 cut(s) 5, 18, 26, 37, 173, 190, 211
CviKI_1 RGCY 7 cut(s) 5, 18, 26, 37, 173, 190, 211
CviQI GTAC 1 cut(s) 138
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
EciI GGCGGA 2 cut(s) 252, 293
EcoRII CCWGG 1 cut(s) 43
FaiI YATR 3 cut(s) 156, 219, 234
FalI AAGNNNNNCTT 2 cut(s) 177, 209
Fnu4HI GCNGC 4 cut(s) 38, 191, 222, 225
FokI GGATG 2 cut(s) 117, 299
Fsp4HI GCNGC 4 cut(s) 38, 191, 222, 225
GluI GCNGC 4 cut(s) 38, 191, 222, 225
HapII CCGG 2 cut(s) 13, 275
HpaII CCGG 2 cut(s) 13, 275
HphI GGTGA 2 cut(s) 94, 133
Hpy188I TCNGA 2 cut(s) 98, 202
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 128, 270
HpySE526I ACGT 1 cut(s) 230
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 7 cut(s) 26, 30, 57, 96, 126, 166, 288
Lsp1109I GCAGC 2 cut(s) 24, 177
MabI ACCWGGT 1 cut(s) 43
MaeII ACGT 1 cut(s) 230
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 1 cut(s) 97
MfeI CAATTG 1 cut(s) 133
MflI RGATCY 1 cut(s) 202
MluCI AATT 2 cut(s) 133, 257
MmeI TCCRAC 2 cut(s) 145, 180
MnlI CCTC 4 cut(s) 92, 163, 233, 236
MroXI GAANNNNTTC 1 cut(s) 92
MspI CCGG 2 cut(s) 13, 275
MspR9I CCNGG 2 cut(s) 14, 45
MunI CAATTG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 45
NciI CCSGG 1 cut(s) 14
NdeII GATC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 92
PkrI GCNGC 4 cut(s) 39, 192, 223, 226
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SatI GCNGC 4 cut(s) 38, 191, 222, 225
Sau3AI GATC 1 cut(s) 202
ScrFI CCNGG 2 cut(s) 14, 45
SetI ASST 4 cut(s) 49, 103, 233, 247
SexAI ACCWGGT 1 cut(s) 43
Sse9I AATT 2 cut(s) 133, 257
SsiI CCGC 4 cut(s) 221, 224, 237, 278
StyD4I CCNGG 2 cut(s) 12, 43
TaiI ACGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 9
TaqII GACCGA 1 cut(s) 186
TasI AATT 2 cut(s) 133, 257
TatI WGTACW 1 cut(s) 137
TauI GCSGC 2 cut(s) 224, 227
TseI GCWGC 2 cut(s) 37, 190
XapI RAATTY 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.