RLG00000015781

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
1404014 .. 1406146
2133 bp
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UTR
Exon/CDS
Intron
RLM00000015781

Sequence Viewer

Length: 378 bp
ATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGACGTCGGCAGCTATCGGCAGCTATCGGCAGGTGTATGCAGGGCTGTCGGCAGCTTCTCGGCAGGGGCCTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGCTCAGCAGGTGTCGACAGGTCTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGATGCTCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGCTCGGCAGGTGTCGGCAGGAATTAAGAATGTTCCTCCTCCTCTGAATGATGTATTCCTTTCAGAATCGGGATGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

12.79

Weight (kDa)

11.67

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 373
AluBI AGCT 4 cut(s) 44, 54, 86, 130
AluI AGCT 4 cut(s) 44, 54, 86, 130
Alw21I GWGCWC 6 cut(s) 145, 176, 207, 239, 280, 301
Alw26I GTCTC 4 cut(s) 167, 219, 251, 292
AoxI GGCC 2 cut(s) 23, 98
ApeKI GCWGC 4 cut(s) 41, 51, 83, 127
AspS9I GGNCC 2 cut(s) 23, 98
Bbv12I GWGCWC 6 cut(s) 145, 176, 207, 239, 280, 301
BbvI GCAGC 4 cut(s) 53, 63, 95, 139
BcgI CGANNNNNNTGC 7 cut(s) 8, 30, 42, 60, 83, 94, 117
BcoDI GTCTC 4 cut(s) 167, 219, 251, 292
BfaI CTAG 1 cut(s) 123
BisI GCNGC 4 cut(s) 42, 52, 84, 128
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 4 cut(s) 43, 53, 85, 129
BmgT120I GGNCC 2 cut(s) 23, 98
BmiI GGNNCC 2 cut(s) 24, 99
BmsI GCATC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 4 cut(s) 167, 219, 251, 292
BsaJI CCNNGG 2 cut(s) 26, 101
BseDI CCNNGG 2 cut(s) 26, 101
BseGI GGATG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 2 cut(s) 324, 327
BseXI GCAGC 4 cut(s) 53, 63, 95, 139
BshFI GGCC 2 cut(s) 25, 100
BsiHKAI GWGCWC 6 cut(s) 145, 176, 207, 239, 280, 301
BsmAI GTCTC 4 cut(s) 167, 219, 251, 292
BsnI GGCC 2 cut(s) 25, 100
Bso31I GGTCTC 4 cut(s) 167, 219, 251, 292
Bsp1286I GDGCHC 6 cut(s) 145, 176, 207, 239, 280, 301
Bsp1720I GCTNAGC 1 cut(s) 144
BspANI GGCC 2 cut(s) 25, 100
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 24, 99
BspTNI GGTCTC 4 cut(s) 167, 219, 251, 292
BssECI CCNNGG 2 cut(s) 26, 101
BssNI GRCGYC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 374
BstMAI GTCTC 4 cut(s) 167, 219, 251, 292
BstV1I GCAGC 4 cut(s) 53, 63, 95, 139
BsuRI GGCC 2 cut(s) 25, 100
BtsCI GGATG 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 23, 98
Csp6I GTAC 1 cut(s) 372
CviJI RGCY 7 cut(s) 25, 44, 54, 76, 86, 100, 130
CviKI_1 RGCY 7 cut(s) 25, 44, 54, 76, 86, 100, 130
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 1 cut(s) 144
Eco31I GGTCTC 4 cut(s) 167, 219, 251, 292
EcoO109I RGGNCCY 2 cut(s) 23, 98
FaiI YATR 1 cut(s) 69
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 4 cut(s) 42, 52, 84, 128
Fsp4HI GCNGC 4 cut(s) 42, 52, 84, 128
FspBI CTAG 1 cut(s) 123
GluI GCNGC 4 cut(s) 42, 52, 84, 128
HaeIII GGCC 2 cut(s) 25, 100
Hin1I GRCGYC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 2 cut(s) 342, 361
Hpy188III TCNNGA 1 cut(s) 366
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 35
Lsp1109I GCAGC 4 cut(s) 53, 63, 95, 139
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 35
MhlI GDGCHC 6 cut(s) 145, 176, 207, 239, 280, 301
MluCI AATT 1 cut(s) 318
MnlI CCTC 5 cut(s) 36, 111, 342, 345, 348
MseI TTAA 2 cut(s) 321, 376
NlaIV GGNNCC 2 cut(s) 24, 99
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 4 cut(s) 43, 53, 85, 129
PspN4I GGNNCC 2 cut(s) 24, 99
PspPI GGNCC 2 cut(s) 23, 98
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
SalI GTCGAC 1 cut(s) 154
SaqAI TTAA 2 cut(s) 321, 376
SatI GCNGC 4 cut(s) 42, 52, 84, 128
Sau96I GGNCC 2 cut(s) 23, 98
SduI GDGCHC 6 cut(s) 145, 176, 207, 239, 280, 301
SfaNI GCATC 1 cut(s) 213
Sse9I AATT 1 cut(s) 318
SspMI CTAG 1 cut(s) 123
TaiI ACGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 155
TasI AATT 1 cut(s) 318
TatI WGTACW 1 cut(s) 371
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 2 cut(s) 321, 376
Tru9I TTAA 2 cut(s) 321, 376
TseI GCWGC 4 cut(s) 41, 51, 83, 127
XmiI GTMKAC 1 cut(s) 155
XspI CTAG 1 cut(s) 123
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.