Rh3BG283500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001117
Physical Location & Seq
Reverse (-)
28148534 .. 28148878
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG283500.1

Sequence Viewer

Length: 345 bp
ATGGATCTTATTTATCGTCACTTTCGTTCAACCAACGGTGCTGTGTGGGGGTATTTGGATTTCGAAGACGGTGTATCAAGCTCAGAGCAACATTTGGTTGTTGACAAGGGTTGGTGGCTCGAGGAGACTCTGGTGCGGCTCTCTGATGGCTTTCGACCGGGGCTTCTTGGCTTGGATTTGGCTGCTACAGGTGGTAATGGTGTTGGCAGCGATAATCTCAAAATGGTGAAGAACGAGTTCAGAGGTGGACGGACTGGTGTTGGGGTGATTGCCGACAACTGTACTGTTCTATTTCGATCTGTGTTTGTTGGAGAGGCTGATGGCTGGGAAGGGCTGCTTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.48

Weight (kDa)

4.87

Isoelectric Point (pI)

24.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 283
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 119
ApeKI GCWGC 3 cut(s) 182, 207, 334
Asp700I GAANNNNTTC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 238, 277
AsuII TTCGAA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 3 cut(s) 169, 219, 321
BccI CCATC 2 cut(s) 140, 314
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 4 cut(s) 137, 183, 208, 335
BlsI GCNGC 4 cut(s) 138, 184, 209, 336
Bme1390I CCNGG 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 169, 219, 321
BseYI CCCAGC 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 158
BsiEI CGRYCG 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 119
Bsp119I TTCGAA 1 cut(s) 63
Bsp143I GATC 2 cut(s) 4, 296
BspACI CCGC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 95
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 63
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 2 cut(s) 4, 296
Bst4CI ACNGT 4 cut(s) 38, 71, 281, 286
BstBI TTCGAA 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 82
BstKTI GATC 2 cut(s) 7, 299
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 4, 296
BstMCI CGRYCG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 169, 219, 321
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Csp6I GTAC 1 cut(s) 282
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 82
DpnI GATC 2 cut(s) 6, 298
DpnII GATC 2 cut(s) 4, 296
Eco88I CYCGRG 1 cut(s) 119
FalI AAGNNNNNCTT 1 cut(s) 321
Fnu4HI GCNGC 4 cut(s) 137, 183, 208, 335
Fsp4HI GCNGC 4 cut(s) 137, 183, 208, 335
GluI GCNGC 4 cut(s) 137, 183, 208, 335
GsaI CCCAGC 1 cut(s) 328
HapII CCGG 1 cut(s) 158
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 158
HphI GGTGA 2 cut(s) 238, 277
Hpy166II GTNNAC 2 cut(s) 103, 248
Hpy188I TCNGA 3 cut(s) 85, 145, 242
Hpy8I GTNNAC 2 cut(s) 103, 248
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 4 cut(s) 38, 71, 281, 286
HpyF3I CTNAG 1 cut(s) 82
Kzo9I GATC 2 cut(s) 4, 296
LpnPI CCDG 5 cut(s) 116, 171, 174, 240, 310
Lsp1109I GCAGC 3 cut(s) 169, 219, 321
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 6, 298
MboI GATC 2 cut(s) 4, 296
MboII GAAGA 2 cut(s) 77, 241
MflI RGATCY 1 cut(s) 4
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 3 cut(s) 115, 236, 307
MroXI GAANNNNTTC 1 cut(s) 236
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 159
NciI CCSGG 1 cut(s) 159
NdeII GATC 2 cut(s) 4, 296
NmuCI GTSAC 1 cut(s) 17
NspV TTCGAA 1 cut(s) 63
PaeR7I CTCGAG 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 236
PkrI GCNGC 4 cut(s) 138, 184, 209, 336
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 324
PspXI VCTCGAGB 1 cut(s) 119
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SatI GCNGC 4 cut(s) 137, 183, 208, 335
Sau3AI GATC 2 cut(s) 4, 296
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 159
SetI ASST 3 cut(s) 83, 193, 247
SfcI CTRYAG 1 cut(s) 186
Sfr274I CTCGAG 1 cut(s) 119
SfuI TTCGAA 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SsiI CCGC 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 4 cut(s) 38, 71, 281, 286
TaqI TCGA 4 cut(s) 63, 120, 154, 295
TatI WGTACW 1 cut(s) 281
TauI GCSGC 1 cut(s) 139
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 3 cut(s) 182, 207, 334
Tsp45I GTSAC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 265
XhoI CTCGAG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.