Rorug07G0110900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001117
Physical Location & Seq
Forward (+)
8663057 .. 8665517
2461 bp
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UTR
Exon/CDS
Intron
Rorug07G0110900.1

Sequence Viewer

Length: 444 bp
ATGAGGTATCCAGGCATAGAGGAAGAAATGGTGGAGATGTTACAGATAGCTATGTCTTGCGTGGTAAGAATGCCAGATCAGCGACCTAAGATGCTGGATGTAGTGAAGATGATAGGAAACGTGCGGCGGATGGATAATGAGAATCGTCCATCTTCTGGAAACAGATCAGAAAGCACAACACCCCTCGGATCAACACCGCCGCCAGTAGTTGGAACACCACAATCAACCTCACAAGAACGACTTTTAACAATATTCACCGAATCTTCTCAGCTTGTTTCACCTGGATATTGCGCATGGCATCCAATGTTCTGTGCAGCAAAACTGGTGCAAGAAGCTTGGCCGATGGTGGAATCTTCCTTAGAAAAGTATTGCATTTCATGCACACTTGATCAGGCCATACAAATATTGGATGGTGCAATGGCTGAACACCCTGATGTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

4.83

Isoelectric Point (pI)

69.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 292
AccB7I CCANNNNNTGG 2 cut(s) 155, 209
AciI CCGC 4 cut(s) 124, 127, 197, 200
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 338
AfiI CCNNNNNNNGG 3 cut(s) 155, 209, 436
AjnI CCWGG 2 cut(s) 10, 280
AluBI AGCT 3 cut(s) 50, 271, 335
AluI AGCT 3 cut(s) 50, 271, 335
AlwI GGATC 1 cut(s) 196
AoxI GGCC 2 cut(s) 338, 393
ApeKI GCWGC 1 cut(s) 314
AspLEI GCGC 1 cut(s) 293
AsuHPI GGTGA 2 cut(s) 247, 270
BbvI GCAGC 1 cut(s) 326
BccI CCATC 4 cut(s) 124, 157, 337, 404
BciT130I CCWGG 2 cut(s) 12, 282
BciVI GTATCC 1 cut(s) 18
BclI TGATCA 1 cut(s) 388
BfuI GTATCC 1 cut(s) 18
BisI GCNGC 3 cut(s) 125, 200, 315
BlsI GCNGC 3 cut(s) 126, 201, 316
Bme1390I CCNGG 2 cut(s) 12, 282
BmrFI CCNGG 2 cut(s) 12, 282
BmsI GCATC 2 cut(s) 81, 307
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 209, 436
Bse1I ACTGG 2 cut(s) 203, 327
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 2 cut(s) 12, 282
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 4 cut(s) 103, 135, 298, 415
BseLI CCNNNNNNNGG 3 cut(s) 155, 209, 436
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 2 cut(s) 203, 327
BseXI GCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 2 cut(s) 340, 395
BslI CCNNNNNNNGG 3 cut(s) 155, 209, 436
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 2 cut(s) 340, 395
Bsp143I GATC 4 cut(s) 76, 164, 188, 388
BspACI CCGC 4 cut(s) 124, 127, 197, 200
BspANI GGCC 2 cut(s) 340, 395
BspCNI CTCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 2 cut(s) 203, 327
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 4 cut(s) 76, 164, 188, 388
Bst2UI CCWGG 2 cut(s) 12, 282
BstAPI GCANNNNNTGC 1 cut(s) 378
BstDEI CTNAG 3 cut(s) 87, 267, 358
BstF5I GGATG 4 cut(s) 103, 135, 298, 415
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 4 cut(s) 79, 167, 191, 391
BstMBI GATC 4 cut(s) 76, 164, 188, 388
BstMWI GCNNNNNNNGC 2 cut(s) 79, 378
BstNI CCWGG 2 cut(s) 12, 282
BstSCI CCNGG 2 cut(s) 10, 280
BstV1I GCAGC 1 cut(s) 326
BsuI GTATCC 1 cut(s) 18
BsuRI GGCC 2 cut(s) 340, 395
BtsCI GGATG 4 cut(s) 103, 135, 298, 415
CfoI GCGC 1 cut(s) 293
CviAII CATG 2 cut(s) 294, 378
CviJI RGCY 6 cut(s) 50, 271, 335, 340, 395, 422
CviKI_1 RGCY 6 cut(s) 50, 271, 335, 340, 395, 422
DdeI CTNAG 3 cut(s) 87, 267, 358
DpnI GATC 4 cut(s) 78, 166, 190, 390
DpnII GATC 4 cut(s) 76, 164, 188, 388
EaeI YGGCCR 1 cut(s) 338
EciI GGCGGA 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 10, 280
FaeI CATG 2 cut(s) 297, 381
FaiI YATR 5 cut(s) 17, 53, 295, 379, 398
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 2 cut(s) 293, 377
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 3 cut(s) 125, 200, 315
FokI GGATG 4 cut(s) 110, 142, 285, 422
Fsp4HI GCNGC 3 cut(s) 125, 200, 315
FspI TGCGCA 1 cut(s) 292
GlaI GCGC 1 cut(s) 292
GluI GCNGC 3 cut(s) 125, 200, 315
HaeIII GGCC 2 cut(s) 340, 395
HhaI GCGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 297, 381
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 333
HinfI GANTC 3 cut(s) 142, 260, 350
HphI GGTGA 2 cut(s) 247, 270
Hpy188I TCNGA 2 cut(s) 169, 188
Hpy188III TCNNGA 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 5 cut(s) 314, 328, 372, 381, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 378
HpyF3I CTNAG 3 cut(s) 87, 267, 358
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 2 cut(s) 297, 381
HspAI GCGC 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 4 cut(s) 76, 164, 188, 388
LpnPI CCDG 9 cut(s) 24, 80, 87, 141, 216, 267, 294, 308, 377
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 2 cut(s) 81, 307
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 39
MalI GATC 4 cut(s) 78, 166, 190, 390
MboI GATC 4 cut(s) 76, 164, 188, 388
MboII GAAGA 5 cut(s) 35, 118, 144, 255, 345
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 3 cut(s) 13, 194, 238
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 432
MspR9I CCNGG 2 cut(s) 12, 282
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 2 cut(s) 12, 282
MwoI GCNNNNNNNGC 2 cut(s) 79, 378
NdeII GATC 4 cut(s) 76, 164, 188, 388
NlaIII CATG 2 cut(s) 297, 381
NsbI TGCGCA 1 cut(s) 292
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 3 cut(s) 142, 260, 350
PflMI CCANNNNNTGG 2 cut(s) 155, 209
PkrI GCNGC 3 cut(s) 126, 201, 316
Psp6I CCWGG 2 cut(s) 10, 280
PspGI CCWGG 2 cut(s) 10, 280
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 3 cut(s) 125, 200, 315
Sau3AI GATC 4 cut(s) 76, 164, 188, 388
ScrFI CCNGG 2 cut(s) 12, 282
SetI ASST 8 cut(s) 8, 52, 88, 123, 230, 273, 283, 337
SfaNI GCATC 2 cut(s) 81, 307
SmiMI CAYNNNNRTG 1 cut(s) 432
SsiI CCGC 4 cut(s) 124, 127, 197, 200
SspI AATATT 2 cut(s) 252, 405
StyD4I CCNGG 2 cut(s) 10, 280
TaiI ACGT 1 cut(s) 123
TauI GCSGC 2 cut(s) 127, 202
TfiI GAWTC 3 cut(s) 142, 260, 350
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 366
Van91I CCANNNNNTGG 2 cut(s) 155, 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.