RLG00000011110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001117
Physical Location & Seq
Reverse (-)
6886715 .. 6888479
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011110

Sequence Viewer

Length: 678 bp
ATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGACGTCGGCAGCTATCGGCAGGTGTCTGCAGGGCTGTCGGCAGCTTCTCGGCAGGGGCCTCAGCAGGTGTCGGCAGGTGGTAGGCAGCTATAGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGCTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGCTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGCTGCTCGGCAGGTCTCGGCAGGAGGCTTGCAGGGGCTGTCGGCAGGTCTCGGCAGCTTCTCGGCAGATCTCGGCAGATGTCGACAGGGGTCGGCAGCGATCTCTACGTTCACGATCTGCTAGCCGGTAGCCGTAGGATAAGCGTCACTGTTTCTGCGGAAATCAAGAACAAGATGAAGATCAGCACGCAGTGCAAGAGACGACCAAGTCGTATTCCCCCACCAGCAATAATATTTGTGGTTGTAAGAAAAACGAGAATTTCATTAATAAAATACTATTATTATAGAGAAATTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.28

Weight (kDa)

11.76

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 585
AatII GACGTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 461
AciI CCGC 1 cut(s) 536
AcsI RAATTY 1 cut(s) 636
AcyI GRCGYC 1 cut(s) 35
AdeI CACNNNGTG 1 cut(s) 570
AluBI AGCT 7 cut(s) 44, 76, 120, 256, 329, 381, 436
AluI AGCT 7 cut(s) 44, 76, 120, 256, 329, 381, 436
Alw21I GWGCWC 8 cut(s) 135, 156, 188, 219, 240, 292, 313, 365
Alw26I GTCTC 5 cut(s) 325, 377, 398, 432, 571
AlwNI CAGNNNCTG 1 cut(s) 416
AoxI GGCC 2 cut(s) 23, 88
ApoI RAATTY 1 cut(s) 636
AseI ATTAAT 1 cut(s) 644
AspS9I GGNCC 2 cut(s) 23, 88
AsuNHI GCTAGC 1 cut(s) 499
Bbv12I GWGCWC 8 cut(s) 135, 156, 188, 219, 240, 292, 313, 365
BbvCI CCTCAGC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 495
BcgI CGANNNNNNTGC 5 cut(s) 8, 30, 42, 50, 84
BcoDI GTCTC 5 cut(s) 325, 377, 398, 432, 571
BfaI CTAG 1 cut(s) 500
BfmI CTRYAG 2 cut(s) 59, 121
BglII AGATCT 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 23, 88
BmiI GGNNCC 2 cut(s) 24, 89
BmtI GCTAGC 1 cut(s) 503
BoxI GACNNNNGTC 1 cut(s) 467
Bpu10I CCTNAGC 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 557
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 4 cut(s) 325, 377, 398, 432
BsaJI CCNNGG 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 503
Bse8I GATNNNNATC 1 cut(s) 557
BseDI CCNNGG 1 cut(s) 26
BseJI GATNNNNATC 1 cut(s) 557
BseMII CTCAG 1 cut(s) 106
BshFI GGCC 2 cut(s) 25, 90
BsiHKAI GWGCWC 8 cut(s) 135, 156, 188, 219, 240, 292, 313, 365
BsiSI CCGG 1 cut(s) 504
BsmAI GTCTC 5 cut(s) 325, 377, 398, 432, 571
BsmBI CGTCTC 1 cut(s) 571
BsnI GGCC 2 cut(s) 25, 90
Bso31I GGTCTC 4 cut(s) 325, 377, 398, 432
Bsp1286I GDGCHC 8 cut(s) 135, 156, 188, 219, 240, 292, 313, 365
Bsp143I GATC 4 cut(s) 446, 478, 493, 558
BspACI CCGC 1 cut(s) 536
BspANI GGCC 2 cut(s) 25, 90
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 24, 89
BspMAI CTGCAG 1 cut(s) 63
BspOI GCTAGC 1 cut(s) 503
BspTNI GGTCTC 4 cut(s) 325, 377, 398, 432
BsrFI RCCGGY 1 cut(s) 503
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 4 cut(s) 446, 478, 493, 558
BssNI GRCGYC 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 529
BstACI GRCGYC 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 570
BstC8I GCNNGC 3 cut(s) 408, 501, 566
BstDEI CTNAG 1 cut(s) 92
BstKTI GATC 4 cut(s) 449, 481, 496, 561
BstMAI GTCTC 5 cut(s) 325, 377, 398, 432, 571
BstMBI GATC 4 cut(s) 446, 478, 493, 558
BstMWI GCNNNNNNNGC 1 cut(s) 570
BstPAI GACNNNNGTC 1 cut(s) 467
BstSFI CTRYAG 2 cut(s) 59, 121
BstX2I RGATCY 1 cut(s) 446
BstYI RGATCY 1 cut(s) 446
BsuRI GGCC 2 cut(s) 25, 90
BtsI GCAGTG 1 cut(s) 575
BtsIMutI CAGTG 2 cut(s) 525, 575
Cac8I GCNNGC 3 cut(s) 408, 501, 566
CaiI CAGNNNCTG 1 cut(s) 416
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 2 cut(s) 23, 88
CseI GACGC 1 cut(s) 511
DdeI CTNAG 1 cut(s) 92
DpnI GATC 4 cut(s) 448, 480, 495, 560
DpnII GATC 4 cut(s) 446, 478, 493, 558
DraIII CACNNNGTG 1 cut(s) 570
DrdI GACNNNNNNGTC 1 cut(s) 585
DseDI GACNNNNNNGTC 1 cut(s) 585
Eco31I GGTCTC 4 cut(s) 325, 377, 398, 432
EcoO109I RGGNCCY 2 cut(s) 23, 88
Esp3I CGTCTC 1 cut(s) 571
FaiI YATR 2 cut(s) 123, 663
FblI GTMKAC 1 cut(s) 461
FspBI CTAG 1 cut(s) 500
HaeIII GGCC 2 cut(s) 25, 90
HapII CCGG 1 cut(s) 504
HgaI GACGC 1 cut(s) 511
Hin1I GRCGYC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HpaII CCGG 1 cut(s) 504
Hpy166II GTNNAC 2 cut(s) 462, 490
Hpy188III TCNNGA 2 cut(s) 491, 544
Hpy8I GTNNAC 2 cut(s) 462, 490
Hpy99I CGWCG 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 2 cut(s) 35, 486
HpyCH4V TGCA 3 cut(s) 61, 410, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 570
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 2 cut(s) 35, 486
Hsp92I GRCGYC 1 cut(s) 35
Kzo9I GATC 4 cut(s) 446, 478, 493, 558
MaeI CTAG 1 cut(s) 500
MaeII ACGT 2 cut(s) 35, 486
MaeIII GTNAC 1 cut(s) 523
MalI GATC 4 cut(s) 448, 480, 495, 560
MboI GATC 4 cut(s) 446, 478, 493, 558
MboII GAAGA 1 cut(s) 568
MflI RGATCY 1 cut(s) 446
MhlI GDGCHC 8 cut(s) 135, 156, 188, 219, 240, 292, 313, 365
MluCI AATT 2 cut(s) 636, 669
MnlI CCTC 3 cut(s) 36, 101, 396
MseI TTAA 1 cut(s) 644
MspA1I CMGCKG 3 cut(s) 256, 329, 381
MspI CCGG 1 cut(s) 504
MwoI GCNNNNNNNGC 1 cut(s) 570
NdeII GATC 4 cut(s) 446, 478, 493, 558
NheI GCTAGC 1 cut(s) 499
NlaIV GGNNCC 2 cut(s) 24, 89
NmuCI GTSAC 1 cut(s) 523
PcsI WCGNNNNNNNCGW 1 cut(s) 586
PflFI GACNNNGTC 1 cut(s) 585
PshAI GACNNNNGTC 1 cut(s) 467
PshBI ATTAAT 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 24, 89
PspPI GGNCC 2 cut(s) 23, 88
PstI CTGCAG 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 1 cut(s) 446
PsyI GACNNNGTC 1 cut(s) 585
PvuII CAGCTG 3 cut(s) 256, 329, 381
SalI GTCGAC 1 cut(s) 460
SaqAI TTAA 1 cut(s) 644
Sau3AI GATC 4 cut(s) 446, 478, 493, 558
Sau96I GGNCC 2 cut(s) 23, 88
SduI GDGCHC 8 cut(s) 135, 156, 188, 219, 240, 292, 313, 365
SfcI CTRYAG 2 cut(s) 59, 121
Sse9I AATT 2 cut(s) 636, 669
SsiI CCGC 1 cut(s) 536
SspI AATATT 1 cut(s) 612
SspMI CTAG 1 cut(s) 500
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 2 cut(s) 38, 489
TaqI TCGA 1 cut(s) 461
TasI AATT 2 cut(s) 636, 669
Tru1I TTAA 1 cut(s) 644
Tru9I TTAA 1 cut(s) 644
TscAI CASTG 2 cut(s) 532, 575
TseFI GTSAC 1 cut(s) 523
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 2 cut(s) 569, 630
TspRI CASTG 2 cut(s) 532, 575
Tth111I GACNNNGTC 1 cut(s) 585
VspI ATTAAT 1 cut(s) 644
XapI RAATTY 1 cut(s) 636
XmiI GTMKAC 1 cut(s) 461
XspI CTAG 1 cut(s) 500
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.