Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Reverse (-)

35807406 .. 35808924

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGACGTCAGCAGCTATCGGCAGGTGTGTGCAGGGCTGTCGGCAGCCTCTCGGCAGGGGCCTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGTTCGGCAGGTGTCGACAGGTCTCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGCTCGGCAGGTGCTCGGCAGGTCTCGGCAAGTGTCGGCAGGTGTTCGGCAGGTGTCTCCAGGTCTCGGCAGGTGCTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTATTGACTCACATCTTCAGCCGCAGCTCAATTTTTCCCCCCTCTCTTGCTGCGCTCGCTCTACTCATGCAACCGGCCACCACCAGGTTTGCTGAGAAGATGTGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.41

Weight (kDa)

12.0

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	145
AciI	CCGC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	248, 381
AjnI	CCWGG	2 cut(s)	241, 380
AluBI	AGCT	3 cut(s)	44, 120, 324
AluI	AGCT	3 cut(s)	44, 120, 324
Alw21I	GWGCWC	6 cut(s)	166, 187, 198, 260, 271, 292
Alw26I	GTCTC	5 cut(s)	157, 178, 210, 243, 251
AoxI	GGCC	3 cut(s)	23, 88, 372
ApeKI	GCWGC	5 cut(s)	41, 73, 117, 321, 347
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	23, 88
Bbv12I	GWGCWC	6 cut(s)	166, 187, 198, 260, 271, 292
BbvI	GCAGC	5 cut(s)	53, 85, 129, 333, 334
BcgI	CGANNNNNNTGC	7 cut(s)	8, 30, 42, 50, 73, 84, 107
BciT130I	CCWGG	2 cut(s)	243, 382
BcoDI	GTCTC	5 cut(s)	157, 178, 210, 243, 251
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	6 cut(s)	42, 74, 118, 319, 322, 348
BlsI	GCNGC	6 cut(s)	43, 75, 119, 320, 323, 349
Bme1390I	CCNGG	2 cut(s)	243, 382
BmgT120I	GGNCC	2 cut(s)	23, 88
BmiI	GGNNCC	2 cut(s)	24, 89
BmrFI	CCNGG	2 cut(s)	243, 382
BpmI	CTGGAG	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	4 cut(s)	157, 178, 210, 251
BsaJI	CCNNGG	2 cut(s)	26, 91
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 381
Bse118I	RCCGGY	1 cut(s)	370
BseBI	CCWGG	2 cut(s)	243, 382
BseDI	CCNNGG	2 cut(s)	26, 91
BseLI	CCNNNNNNNGG	2 cut(s)	248, 381
BseMII	CTCAG	1 cut(s)	381
BseXI	GCAGC	5 cut(s)	53, 85, 129, 333, 334
BsgI	GTGCAG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	25, 90, 374
BsiHKAI	GWGCWC	6 cut(s)	166, 187, 198, 260, 271, 292
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	248, 381
BsmAI	GTCTC	5 cut(s)	157, 178, 210, 243, 251
BsnI	GGCC	3 cut(s)	25, 90, 374
Bso31I	GGTCTC	4 cut(s)	157, 178, 210, 251
Bsp1286I	GDGCHC	6 cut(s)	166, 187, 198, 260, 271, 292
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	3 cut(s)	25, 90, 374
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	24, 89
BspTNI	GGTCTC	4 cut(s)	157, 178, 210, 251
BsrFI	RCCGGY	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	26, 91
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	243, 382
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	352
BstMAI	GTCTC	5 cut(s)	157, 178, 210, 243, 251
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	243, 382
BstSCI	CCNGG	2 cut(s)	241, 380
BstV1I	GCAGC	5 cut(s)	53, 85, 129, 333, 334
BsuRI	GGCC	3 cut(s)	25, 90, 374
Cac8I	GCNNGC	1 cut(s)	354
CfoI	GCGC	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	23, 88
CsiI	ACCWGGT	1 cut(s)	380
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	9 cut(s)	25, 44, 66, 76, 90, 120, 318, 324, 374
CviKI_1	RGCY	9 cut(s)	25, 44, 66, 76, 90, 120, 318, 324, 374
DdeI	CTNAG	1 cut(s)	390
EaeI	YGGCCR	1 cut(s)	372
Eco31I	GGTCTC	4 cut(s)	157, 178, 210, 251
Eco57I	CTGAAG	1 cut(s)	298
EcoO109I	RGGNCCY	2 cut(s)	23, 88
EcoRII	CCWGG	2 cut(s)	241, 380
FaeI	CATG	1 cut(s)	367
FaiI	YATR	1 cut(s)	365
FatI	CATG	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	145
Fnu4HI	GCNGC	6 cut(s)	42, 74, 118, 319, 322, 348
Fsp4HI	GCNGC	6 cut(s)	42, 74, 118, 319, 322, 348
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	6 cut(s)	42, 74, 118, 319, 322, 348
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	25, 90, 374
HapII	CCGG	1 cut(s)	371
HhaI	GCGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	61, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	1 cut(s)	350
Lsp1109I	GCAGC	5 cut(s)	53, 85, 129, 333, 334
MabI	ACCWGGT	1 cut(s)	380
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	35
MboII	GAAGA	2 cut(s)	304, 406
MhlI	GDGCHC	6 cut(s)	166, 187, 198, 260, 271, 292
MluCI	AATT	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	4 cut(s)	36, 87, 101, 349
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	243, 382
MvaI	CCWGG	2 cut(s)	243, 382
MwoI	GCNNNNNNNGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	2 cut(s)	24, 89
PkrI	GCNGC	6 cut(s)	43, 75, 119, 320, 323, 349
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	241, 380
PspGI	CCWGG	2 cut(s)	241, 380
PspN4I	GGNNCC	2 cut(s)	24, 89
PspPI	GGNCC	2 cut(s)	23, 88
SalI	GTCGAC	1 cut(s)	144
SatI	GCNGC	6 cut(s)	42, 74, 118, 319, 322, 348
Sau96I	GGNCC	2 cut(s)	23, 88
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	243, 382
SduI	GDGCHC	6 cut(s)	166, 187, 198, 260, 271, 292
SexAI	ACCWGGT	1 cut(s)	380
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	241, 380
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	145
TasI	AATT	1 cut(s)	327
TauI	GCSGC	1 cut(s)	321
TseI	GCWGC	5 cut(s)	41, 73, 117, 321, 347
XmiI	GTMKAC	1 cut(s)	145
XspI	CTAG	1 cut(s)	113
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.