Rh1AG075900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001117
Physical Location & Seq
Forward (+)
12590766 .. 12593124
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG075900.1

Sequence Viewer

Length: 450 bp
ATGCCTGCACCAATGCTTGGTGTCATCCTGTCCTCCTGGGCTCAAAGTTGTGGATATTGTGGTCAGCACAGAGGCACAAAAGATGAGCCTAGGCATGTGGTTTCTCCTCTTTCTCTATTTTTGACCGGTGCGAGCTCGACAGTGGAGTGGGCGGAGCTTTCTGATTATGTTGGGATGGATTGGCTAGCTGTATTTGACTGCGGTGGTGGGTTGAGGTGTGGTACCTCTGTCGGTGTTGCTTTTGGGGCAACACAGGTTTGTAGGTGGAGCCTGGATCCGGAATCTTTGACAGATCTGAGGTTTTGTAATAGGCGATACTGGGAATTTCTTCCTGAGAATATCGAAGATCCTGGTGCGTTGGGTCTTGCCAGCAGCGATGGTGATCAGCCCTTGGGGTCTCAGGCAATCCTGATGACTGGGTTAACACGAGAAGAGAATGGCCGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.15

Weight (kDa)

4.57

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 17
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 2 cut(s) 152, 201
AclWI GGATC 3 cut(s) 269, 282, 341
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 2 cut(s) 17, 277
AgeI ACCGGT 1 cut(s) 125
AjnI CCWGG 3 cut(s) 35, 270, 349
AluBI AGCT 3 cut(s) 135, 157, 188
AluI AGCT 3 cut(s) 135, 157, 188
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 3 cut(s) 269, 282, 341
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 372
ApoI RAATTY 1 cut(s) 323
AsiGI ACCGGT 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 327
Asp718I GGTACC 1 cut(s) 221
AspA2I CCTAGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 392
AsuNHI GCTAGC 1 cut(s) 184
AvrII CCTAGG 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 2 cut(s) 43, 137
BauI CACGAG 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 384
BccI CCATC 2 cut(s) 169, 371
BciT130I CCWGG 3 cut(s) 37, 272, 351
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 2 cut(s) 90, 185
BglII AGATCT 1 cut(s) 292
BisI GCNGC 1 cut(s) 373
BlnI CCTAGG 1 cut(s) 89
BlsI GCNGC 1 cut(s) 374
Bme1390I CCNGG 3 cut(s) 37, 272, 351
BmiI GGNNCC 3 cut(s) 223, 269, 276
BmrFI CCNGG 3 cut(s) 37, 272, 351
BmrI ACTGGG 2 cut(s) 328, 426
BmtI GCTAGC 1 cut(s) 188
BmuI ACTGGG 2 cut(s) 328, 426
BsaBI GATNNNNATC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 36, 89, 390
BsaWI WCCGGW 2 cut(s) 125, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 277
Bse118I RCCGGY 2 cut(s) 125, 441
Bse1I ACTGG 2 cut(s) 323, 421
Bse8I GATNNNNATC 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 3 cut(s) 37, 272, 351
BseDI CCNNGG 3 cut(s) 36, 89, 390
BseGI GGATG 2 cut(s) 24, 180
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 2 cut(s) 17, 277
BseMII CTCAG 3 cut(s) 287, 324, 413
BseNI ACTGG 2 cut(s) 323, 421
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 384
BshFI GGCC 1 cut(s) 441
BshNI GGYRCC 1 cut(s) 221
BshTI ACCGGT 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 3 cut(s) 126, 278, 442
BslI CCNNNNNNNGG 2 cut(s) 17, 277
BsmAI GTCTC 1 cut(s) 402
BsnI GGCC 1 cut(s) 441
Bso31I GGTCTC 1 cut(s) 402
Bsp1286I GDGCHC 2 cut(s) 43, 137
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 4 cut(s) 274, 292, 346, 382
BspACI CCGC 2 cut(s) 152, 201
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 3 cut(s) 288, 325, 412
BspEI TCCGGA 1 cut(s) 277
BspLI GGNNCC 3 cut(s) 223, 269, 276
BspOI GCTAGC 1 cut(s) 188
BspPI GGATC 3 cut(s) 269, 282, 341
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 402
BsrFI RCCGGY 2 cut(s) 125, 441
BsrI ACTGG 2 cut(s) 323, 421
BssAI RCCGGY 2 cut(s) 125, 441
BssECI CCNNGG 3 cut(s) 36, 89, 390
BssMI GATC 4 cut(s) 274, 292, 346, 382
BssSI CACGAG 1 cut(s) 426
BssT1I CCWWGG 2 cut(s) 89, 390
Bst2BI CACGAG 1 cut(s) 426
Bst2UI CCWGG 3 cut(s) 37, 272, 351
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 426
BstC8I GCNNGC 4 cut(s) 6, 133, 186, 370
BstDEI CTNAG 3 cut(s) 296, 333, 399
BstF5I GGATG 2 cut(s) 24, 180
BstKTI GATC 4 cut(s) 277, 295, 349, 385
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 4 cut(s) 274, 292, 346, 382
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 3 cut(s) 37, 272, 351
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 35, 270, 349
BstV1I GCAGC 1 cut(s) 384
BstX2I RGATCY 3 cut(s) 274, 292, 346
BstYI RGATCY 3 cut(s) 274, 292, 346
BsuRI GGCC 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 24, 180
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 4 cut(s) 6, 133, 186, 370
Cfr10I RCCGGY 2 cut(s) 125, 441
Csp6I GTAC 1 cut(s) 222
CspAI ACCGGT 1 cut(s) 125
CviAII CATG 1 cut(s) 95
CviJI RGCY 9 cut(s) 41, 88, 135, 157, 184, 188, 270, 388, 441
CviKI_1 RGCY 9 cut(s) 41, 88, 135, 157, 184, 188, 270, 388, 441
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 3 cut(s) 296, 333, 399
DpnI GATC 4 cut(s) 276, 294, 348, 384
DpnII GATC 4 cut(s) 274, 292, 346, 382
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
EciI GGCGGA 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 135
Eco130I CCWWGG 2 cut(s) 89, 390
Eco24I GRGCYC 2 cut(s) 43, 137
Eco31I GGTCTC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 135
EcoRII CCWGG 3 cut(s) 35, 270, 349
EcoT14I CCWWGG 2 cut(s) 89, 390
EcoT38I GRGCYC 2 cut(s) 43, 137
ErhI CCWWGG 2 cut(s) 89, 390
FaeI CATG 1 cut(s) 98
FaiI YATR 2 cut(s) 96, 168
FatI CATG 1 cut(s) 94
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 373
FokI GGATG 2 cut(s) 11, 187
FriOI GRGCYC 2 cut(s) 43, 137
Fsp4HI GCNGC 1 cut(s) 373
FspBI CTAG 2 cut(s) 90, 185
GluI GCNGC 1 cut(s) 373
HaeIII GGCC 1 cut(s) 441
HapII CCGG 3 cut(s) 126, 278, 442
Hin1II CATG 1 cut(s) 98
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 1 cut(s) 281
HpaI GTTAAC 1 cut(s) 423
HpaII CCGG 3 cut(s) 126, 278, 442
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 2 cut(s) 163, 297
Hpy188III TCNNGA 3 cut(s) 278, 332, 409
Hpy8I GTNNAC 1 cut(s) 423
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 3 cut(s) 296, 333, 399
Hsp92II CATG 1 cut(s) 98
Kpn2I TCCGGA 1 cut(s) 277
KpnI GGTACC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 382
KspAI GTTAAC 1 cut(s) 423
Kzo9I GATC 4 cut(s) 274, 292, 346, 382
LmnI GCTCC 2 cut(s) 154, 267
Lsp1109I GCAGC 1 cut(s) 384
MaeI CTAG 2 cut(s) 90, 185
MalI GATC 4 cut(s) 276, 294, 348, 384
MboI GATC 4 cut(s) 274, 292, 346, 382
MboII GAAGA 3 cut(s) 320, 356, 443
MflI RGATCY 3 cut(s) 274, 292, 346
MhlI GDGCHC 2 cut(s) 43, 137
MluCI AATT 1 cut(s) 323
MnlI CCTC 6 cut(s) 43, 65, 117, 207, 235, 291
MroI TCCGGA 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 1 cut(s) 422
MspI CCGG 3 cut(s) 126, 278, 442
MspR9I CCNGG 3 cut(s) 37, 272, 351
MvaI CCWGG 3 cut(s) 37, 272, 351
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 4 cut(s) 274, 292, 346, 382
NheI GCTAGC 1 cut(s) 184
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 3 cut(s) 223, 269, 276
NspI RCATGY 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 281
PflMI CCANNNNNTGG 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 125
PkrI GCNGC 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 137
Psp6I CCWGG 3 cut(s) 35, 270, 349
PspGI CCWGG 3 cut(s) 35, 270, 349
PspN4I GGNNCC 3 cut(s) 223, 269, 276
PsuI RGATCY 3 cut(s) 274, 292, 346
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SacI GAGCTC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 1 cut(s) 373
Sau3AI GATC 4 cut(s) 274, 292, 346, 382
ScrFI CCNGG 3 cut(s) 37, 272, 351
SduI GDGCHC 2 cut(s) 43, 137
SetI ASST 8 cut(s) 137, 159, 190, 218, 227, 258, 266, 302
Sse9I AATT 1 cut(s) 323
SsiI CCGC 2 cut(s) 152, 201
SspMI CTAG 2 cut(s) 90, 185
SstI GAGCTC 1 cut(s) 137
StyD4I CCNGG 3 cut(s) 35, 270, 349
StyI CCWWGG 2 cut(s) 89, 390
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 137, 342
TasI AATT 1 cut(s) 323
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 1 cut(s) 147
TseI GCWGC 1 cut(s) 372
TspRI CASTG 1 cut(s) 147
Van91I CCANNNNNTGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 323
XceI RCATGY 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 2 cut(s) 90, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.