Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Reverse (-)

52778733 .. 52785212

Gene Structure 6480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG298400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCGGCAGATCGTAGTGGAGGTTTCTGGGTGGAGCCTGGATCCGGAATCTTTGAAGGATCTGAGGTTTTGTAAGAGGCGATACTGGGAATTTCTTCCTGAGAATATCGAAGGTCCTAGTGCGTTGGGTATTGCCGGCAGCAATGGTGATCCACCCCTAGGGTCTCGGGTCAGTGCTGATGACTGGGTTAACACAGGAAGAGAATGGCCGGTTCTAATGCTGCAACGTATGGCGGGGGAGGTGGTGATCTGGCCTTTGGTGGTTGCAGACCGGCTGACAAGGATGATCGCGGTGGCTCTACCGTCGTTGGGCGAGGTGGTCTGCGATGTCGAAGTCCTCTGGCAGCGGCACAGGTTGCCGGTGGTGGTGGTATGGAATTCCATGGAGAAAGCTATGGGTTGCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.18

Weight (kDa)

5.16

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	4 cut(s)	4, 233, 290, 346
AclWI	GGATC	4 cut(s)	35, 48, 66, 143
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	89, 376
AfiI	CCNNNNNNNGG	3 cut(s)	43, 158, 308
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	392
AluI	AGCT	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	4 cut(s)	35, 48, 66, 143
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	43
AoxI	GGCC	2 cut(s)	206, 251
ApeKI	GCWGC	3 cut(s)	138, 220, 343
ApoI	RAATTY	2 cut(s)	89, 376
Asp700I	GAANNNNTTC	1 cut(s)	93
AspA2I	CCTAGG	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	158, 256
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	113
AvrII	CCTAGG	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	150, 207, 355
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	117, 158
BisI	GCNGC	5 cut(s)	5, 139, 221, 344, 347
BlnI	CCTAGG	1 cut(s)	157
BlsI	GCNGC	5 cut(s)	6, 140, 222, 345, 348
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	35, 42
BmrFI	CCNGG	1 cut(s)	38
BmrI	ACTGGG	2 cut(s)	94, 193
BmuI	ACTGGG	2 cut(s)	94, 193
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	157, 381
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 158, 308
Bse118I	RCCGGY	4 cut(s)	134, 208, 270, 358
Bse1I	ACTGG	2 cut(s)	89, 188
Bse3DI	GCAATG	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	157, 381
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	3 cut(s)	43, 158, 308
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	53, 90
BseNI	ACTGG	2 cut(s)	89, 188
BseXI	GCAGC	3 cut(s)	150, 207, 355
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	2 cut(s)	208, 253
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	5 cut(s)	44, 135, 209, 271, 359
BslI	CCNNNNNNNGG	3 cut(s)	43, 158, 308
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	208, 253
Bso31I	GGTCTC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	165
Bsp13I	TCCGGA	1 cut(s)	43
Bsp143I	GATC	6 cut(s)	9, 40, 58, 148, 246, 285
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	4 cut(s)	4, 233, 290, 346
BspANI	GGCC	2 cut(s)	208, 253
BspCNI	CTCAG	2 cut(s)	54, 91
BspEI	TCCGGA	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	35, 42
BspPI	GGATC	4 cut(s)	35, 48, 66, 143
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	148
BsrFI	RCCGGY	4 cut(s)	134, 208, 270, 358
BsrI	ACTGG	2 cut(s)	89, 188
BssAI	RCCGGY	4 cut(s)	134, 208, 270, 358
BssECI	CCNNGG	2 cut(s)	157, 381
BssMI	GATC	6 cut(s)	9, 40, 58, 148, 246, 285
BssT1I	CCWWGG	2 cut(s)	157, 381
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	193
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	3 cut(s)	62, 99, 405
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	288
BstFNI	CGCG	1 cut(s)	290
BstKTI	GATC	6 cut(s)	12, 43, 61, 151, 249, 288
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	6 cut(s)	9, 40, 58, 148, 246, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	3 cut(s)	150, 207, 355
BstX2I	RGATCY	2 cut(s)	40, 58
BstYI	RGATCY	2 cut(s)	40, 58
BsuRI	GGCC	2 cut(s)	208, 253
BtgI	CCRYGG	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	136
Cfr10I	RCCGGY	4 cut(s)	134, 208, 270, 358
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	6 cut(s)	36, 208, 253, 274, 296, 392
CviKI_1	RGCY	6 cut(s)	36, 208, 253, 274, 296, 392
DdeI	CTNAG	3 cut(s)	62, 99, 405
DpnI	GATC	6 cut(s)	11, 42, 60, 150, 248, 287
DpnII	GATC	6 cut(s)	9, 40, 58, 148, 246, 285
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	157, 381
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	157, 381
ErhI	CCWWGG	2 cut(s)	157, 381
FaeI	CATG	1 cut(s)	385
FaiI	YATR	4 cut(s)	230, 373, 383, 395
FatI	CATG	1 cut(s)	381
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	5 cut(s)	5, 139, 221, 344, 347
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	5 cut(s)	5, 139, 221, 344, 347
FspBI	CTAG	2 cut(s)	117, 158
GluI	GCNGC	5 cut(s)	5, 139, 221, 344, 347
HaeIII	GGCC	2 cut(s)	208, 253
HapII	CCGG	5 cut(s)	44, 135, 209, 271, 359
Hin1II	CATG	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	47
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	5 cut(s)	44, 135, 209, 271, 359
HphI	GGTGA	2 cut(s)	158, 256
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	44, 98
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	49, 104
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	223, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	3 cut(s)	62, 99, 405
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	385
Kpn2I	TCCGGA	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	9, 40, 58, 148, 246, 285
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	3 cut(s)	150, 207, 355
MaeI	CTAG	2 cut(s)	117, 158
MaeII	ACGT	1 cut(s)	226
MalI	GATC	6 cut(s)	11, 42, 60, 150, 248, 287
MboI	GATC	6 cut(s)	9, 40, 58, 148, 246, 285
MboII	GAAGA	2 cut(s)	86, 210
MflI	RGATCY	2 cut(s)	40, 58
MluCI	AATT	2 cut(s)	89, 376
MnlI	CCTC	6 cut(s)	13, 57, 69, 232, 307, 347
MroI	TCCGGA	1 cut(s)	43
MroNI	GCCGGC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	5 cut(s)	44, 135, 209, 271, 359
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	355
NaeI	GCCGGC	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	6 cut(s)	9, 40, 58, 148, 246, 285
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	35, 42
PdiI	GCCGGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	5 cut(s)	6, 140, 222, 345, 348
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	35, 42
PspPI	GGNCC	1 cut(s)	113
PspPPI	RGGWCCY	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	40, 58
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	5 cut(s)	5, 139, 221, 344, 347
Sau3AI	GATC	6 cut(s)	9, 40, 58, 148, 246, 285
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	8 cut(s)	24, 68, 115, 229, 243, 318, 356, 394
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	2 cut(s)	89, 376
SsiI	CCGC	4 cut(s)	4, 233, 290, 346
SspMI	CTAG	2 cut(s)	117, 158
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	2 cut(s)	157, 381
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	108, 330
TasI	AATT	2 cut(s)	89, 376
TauI	GCSGC	2 cut(s)	7, 349
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	3 cut(s)	138, 220, 343
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	89, 376
XmaJI	CCTAGG	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	2 cut(s)	117, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.