Rorug04G0010800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001117
Physical Location & Seq
Reverse (-)
1839583 .. 1842368
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0010800.1

Sequence Viewer

Length: 519 bp
ATGGCCTCATCCATCACCCAAATCTCTCTCTTCCTTCTACTCCTAACCCTCTTCTCAGAAACCCAATTATCTCAATCCCTCAGAGACCTCAAACCCAACCCCAACCATCCATCCACCTTGCTCCAATCAATCACAGACGTCCATGACCTCCTCCCCAAGTACGGCCTCCCAAGGGGTTTGTTACTCGACAACGTAAGATCCTATACTCTCTCTGACGATGGAACCTTCGAGATCCATCTCGAAAACCCATGTTATGTTCACTTTGATCAATTGGTGTACTACAACAAGAACATAAAAGGGAAGCTGAGTTTCGGCTTTGTTTCCGATGTGTCGGGGATCCAAGCCAAGAAGCTATTCATTTGGGTTACCGTGACGGGGATGCATATGGAACAAGGGTCTGATTCAGTTGAGTTTTACGTTGGGGCTCTGTCCGAGAAATTGCCTGCTAAACAGTTCGAGGATATTCCTGTATGTAAGAGCAAGGCTTGCCGAGGAGGAGCTAGTGTTGAGTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.16

Weight (kDa)

5.92

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 47 - 153 5.8e-29 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AclWI GGATC 4 cut(s) 192, 226, 331, 344
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 2 cut(s) 161, 278
AfiI CCNNNNNNNGG 3 cut(s) 161, 172, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 3 cut(s) 304, 352, 500
AluI AGCT 3 cut(s) 304, 352, 500
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 4 cut(s) 192, 226, 331, 344
AoxI GGCC 2 cut(s) 3, 163
Asp700I GAANNNNTTC 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 7
BamHI GGATCC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 427
BccI CCATC 5 cut(s) 20, 114, 118, 212, 243
BceAI ACGGC 1 cut(s) 178
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 501
BmiI GGNNCC 2 cut(s) 223, 338
BmsI GCATC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 170, 490
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 172, 375
BseDI CCNNGG 2 cut(s) 170, 490
BseGI GGATG 4 cut(s) 8, 106, 110, 384
BseLI CCNNNNNNNGG 3 cut(s) 161, 172, 375
BseMII CTCAG 3 cut(s) 69, 94, 296
BseRI GAGGAG 3 cut(s) 140, 507, 510
BshFI GGCC 2 cut(s) 5, 165
BslI CCNNNNNNNGG 3 cut(s) 161, 172, 375
BsmAI GTCTC 1 cut(s) 78
BsnI GGCC 2 cut(s) 5, 165
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 4 cut(s) 197, 231, 265, 336
BspANI GGCC 2 cut(s) 5, 165
BspCNI CTCAG 3 cut(s) 68, 93, 297
BspLI GGNNCC 2 cut(s) 223, 338
BspPI GGATC 4 cut(s) 192, 226, 331, 344
BspTNI GGTCTC 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 170, 490
BssMI GATC 4 cut(s) 197, 231, 265, 336
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 370, 453
Bst6I CTCTTC 2 cut(s) 35, 56
BstACI GRCGYC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 444, 487
BstDEI CTNAG 3 cut(s) 55, 80, 305
BstEII GGTNACC 1 cut(s) 364
BstF5I GGATG 4 cut(s) 8, 106, 110, 384
BstKTI GATC 4 cut(s) 200, 234, 268, 339
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 4 cut(s) 197, 231, 265, 336
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstPI GGTNACC 1 cut(s) 364
BstX2I RGATCY 3 cut(s) 197, 231, 336
BstYI RGATCY 3 cut(s) 197, 231, 336
BsuRI GGCC 2 cut(s) 5, 165
BtsCI GGATG 4 cut(s) 8, 106, 110, 384
Cac8I GCNNGC 2 cut(s) 444, 487
Csp6I GTAC 2 cut(s) 160, 277
CviAII CATG 2 cut(s) 143, 249
CviJI RGCY 9 cut(s) 5, 165, 304, 315, 344, 352, 425, 485, 500
CviKI_1 RGCY 9 cut(s) 5, 165, 304, 315, 344, 352, 425, 485, 500
CviQI GTAC 2 cut(s) 160, 277
DdeI CTNAG 3 cut(s) 55, 80, 305
DpnI GATC 4 cut(s) 199, 233, 267, 338
DpnII GATC 4 cut(s) 197, 231, 265, 336
Eam1104I CTCTTC 2 cut(s) 35, 56
EarI CTCTTC 2 cut(s) 35, 56
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 427
Eco31I GGTCTC 1 cut(s) 78
Eco91I GGTNACC 1 cut(s) 364
EcoO65I GGTNACC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 146, 252
FaiI YATR 8 cut(s) 144, 204, 250, 255, 293, 384, 386, 472
FatI CATG 2 cut(s) 142, 248
FauNDI CATATG 1 cut(s) 384
FbaI TGATCA 1 cut(s) 265
FokI GGATG 3 cut(s) 93, 97, 391
FriOI GRGCYC 1 cut(s) 427
FspBI CTAG 1 cut(s) 501
HaeIII GGCC 2 cut(s) 5, 165
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 2 cut(s) 146, 252
HinfI GANTC 2 cut(s) 401, 509
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 259, 277
Hpy188I TCNGA 6 cut(s) 58, 83, 214, 325, 400, 433
Hpy188III TCNNGA 2 cut(s) 229, 239
Hpy8I GTNNAC 2 cut(s) 259, 277
HpyAV CCTTC 2 cut(s) 44, 235
HpyCH4III ACNGT 2 cut(s) 370, 453
HpyCH4IV ACGT 3 cut(s) 138, 192, 417
HpyCH4V TGCA 1 cut(s) 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 3 cut(s) 55, 80, 305
HpySE526I ACGT 3 cut(s) 138, 192, 417
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 2 cut(s) 146, 252
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 4 cut(s) 197, 231, 265, 336
LmnI GCTCC 2 cut(s) 126, 497
LpnPI CCDG 2 cut(s) 456, 480
LweI GCATC 1 cut(s) 369
MaeI CTAG 1 cut(s) 501
MaeII ACGT 3 cut(s) 138, 192, 417
MaeIII GTNAC 3 cut(s) 180, 364, 370
MalI GATC 4 cut(s) 199, 233, 267, 338
MboI GATC 4 cut(s) 197, 231, 265, 336
MboII GAAGA 2 cut(s) 22, 43
MfeI CAATTG 1 cut(s) 269
MflI RGATCY 3 cut(s) 197, 231, 336
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 3 cut(s) 65, 269, 437
MlyI GAGTC 1 cut(s) 518
Mph1103I ATGCAT 1 cut(s) 384
MroXI GAANNNNTTC 1 cut(s) 353
MunI CAATTG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 486
NdeI CATATG 1 cut(s) 384
NdeII GATC 4 cut(s) 197, 231, 265, 336
NlaIII CATG 2 cut(s) 146, 252
NlaIV GGNNCC 2 cut(s) 223, 338
NmeAIII GCCGAG 1 cut(s) 515
NmuCI GTSAC 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 401
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PspEI GGTNACC 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 223, 338
PsuI RGATCY 3 cut(s) 197, 231, 336
RsaI GTAC 2 cut(s) 161, 278
RsaNI GTAC 2 cut(s) 160, 277
Sau3AI GATC 4 cut(s) 197, 231, 265, 336
SchI GAGTC 1 cut(s) 518
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 1 cut(s) 369
Sse9I AATT 3 cut(s) 65, 269, 437
SspMI CTAG 1 cut(s) 501
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 370, 453
TaiI ACGT 3 cut(s) 141, 195, 420
TaqI TCGA 4 cut(s) 186, 228, 240, 456
TasI AATT 3 cut(s) 65, 269, 437
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 401
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 501
ZraI GACGTC 1 cut(s) 139
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.