RLG00000009955

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001117
Physical Location & Seq
Forward (+)
60993973 .. 60994436
464 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009955

Sequence Viewer

Length: 384 bp
ATGGTGCTGGGTGGGGATTCTTTGGAGTTCGGAGACAGTCTATCAAGGCCAGAGCAACGTTTGGTCACTAACAAGGGCGATTATGCATATGGTAGCAATAATCTCAAAATGGTGAAGATCGACGTGATCGGGTTCAGAGGGGGACGGACTGGTGTTGGGGTAATTGACGACCACTATTCTATTCTTCTTCGATCTGTGCTCGTTGGAGAGGCTAACGGCTGGGAATGGCTGCTTTGGTCGGATCTGACAAGGTGCTATGCAGCGGGGACGTATGGCAGAGGAGGTGGTGATCTAGAGTTTGGTGAGTGCAGGCCGGCGAACAAGGTTGGTCGCGGTGTTTTTCTATCGTTGGTCTGGGTGGTCTGCTATGTCGAGGTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.91

Weight (kDa)

5.34

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 333
AciI CCGC 2 cut(s) 263, 333
AclI AACGTT 1 cut(s) 58
AclWI GGATC 1 cut(s) 249
AjiI CACGTC 1 cut(s) 124
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 249
AoxI GGCC 2 cut(s) 47, 311
ApeKI GCWGC 2 cut(s) 229, 260
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 3 cut(s) 124, 299, 314
AvaII GGWCC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 216, 272
BceAI ACGGC 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 293
BisI GCNGC 2 cut(s) 230, 261
BlsI GCNGC 2 cut(s) 231, 262
Bme18I GGWCC 1 cut(s) 376
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 376
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 294
BseXI GCAGC 2 cut(s) 216, 272
BseYI CCCAGC 2 cut(s) 7, 219
BsgI GTGCAG 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 2 cut(s) 49, 313
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 2 cut(s) 156, 280
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 2 cut(s) 156, 280
BsnI GGCC 2 cut(s) 49, 313
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 5 cut(s) 117, 126, 191, 241, 289
BspACI CCGC 2 cut(s) 263, 333
BspANI GGCC 2 cut(s) 49, 313
BspFNI CGCG 1 cut(s) 333
BspPI GGATC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 313
BssMI GATC 5 cut(s) 117, 126, 191, 241, 289
Bst4CI ACNGT 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 311, 315
BstFNI CGCG 1 cut(s) 333
BstKTI GATC 5 cut(s) 120, 129, 194, 244, 292
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 5 cut(s) 117, 126, 191, 241, 289
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 216, 272
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 2 cut(s) 49, 313
BtrI CACGTC 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 311, 315
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 376
CviJI RGCY 5 cut(s) 49, 212, 219, 229, 313
CviKI_1 RGCY 5 cut(s) 49, 212, 219, 229, 313
DpnI GATC 5 cut(s) 119, 128, 193, 243, 291
DpnII GATC 5 cut(s) 117, 126, 191, 241, 289
Eco47I GGWCC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 88
FaiI YATR 6 cut(s) 84, 88, 90, 258, 273, 369
FaqI GGGAC 2 cut(s) 156, 280
FauI CCCGC 1 cut(s) 256
FauNDI CATATG 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 230, 261
Fsp4HI GCNGC 2 cut(s) 230, 261
FspBI CTAG 1 cut(s) 293
GluI GCNGC 2 cut(s) 230, 261
GsaI CCCAGC 2 cut(s) 11, 223
HaeIII GGCC 2 cut(s) 49, 313
HapII CCGG 1 cut(s) 314
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 314
HphI GGTGA 3 cut(s) 124, 299, 314
Hpy188I TCNGA 4 cut(s) 32, 137, 241, 246
Hpy188III TCNNGA 1 cut(s) 293
Hpy99I CGWCG 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 3 cut(s) 58, 123, 269
HpyCH4V TGCA 3 cut(s) 86, 260, 309
HpySE526I ACGT 3 cut(s) 58, 123, 269
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 5 cut(s) 117, 126, 191, 241, 289
LpnPI CCDG 6 cut(s) 63, 135, 205, 295, 327, 340
Lsp1109I GCAGC 2 cut(s) 216, 272
MaeI CTAG 1 cut(s) 293
MaeII ACGT 3 cut(s) 58, 123, 269
MaeIII GTNAC 1 cut(s) 64
MalI GATC 5 cut(s) 119, 128, 193, 243, 291
MboI GATC 5 cut(s) 117, 126, 191, 241, 289
MboII GAAGA 3 cut(s) 127, 176, 179
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 162
MmeI TCCRAC 2 cut(s) 184, 219
MnlI CCTC 5 cut(s) 131, 202, 272, 275, 367
Mph1103I ATGCAT 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 313
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 314
MvnI CGCG 1 cut(s) 333
NaeI GCCGGC 1 cut(s) 315
NdeI CATATG 1 cut(s) 88
NdeII GATC 5 cut(s) 117, 126, 191, 241, 289
NgoMIV GCCGGC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 88
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 231, 262
PpuMI RGGWCCY 1 cut(s) 376
Psp1406I AACGTT 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 376
PspFI CCCAGC 2 cut(s) 7, 219
PspPI GGNCC 1 cut(s) 376
PspPPI RGGWCCY 1 cut(s) 376
PsuI RGATCY 1 cut(s) 241
SatI GCNGC 2 cut(s) 230, 261
Sau3AI GATC 5 cut(s) 117, 126, 191, 241, 289
Sau96I GGNCC 1 cut(s) 376
SduI GDGCHC 1 cut(s) 201
SetI ASST 7 cut(s) 61, 126, 254, 272, 286, 327, 378
SinI GGWCC 1 cut(s) 376
Sse9I AATT 1 cut(s) 162
SsiI CCGC 2 cut(s) 263, 333
SspMI CTAG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 3 cut(s) 61, 126, 272
TaqI TCGA 3 cut(s) 120, 190, 372
TasI AATT 1 cut(s) 162
TfiI GAWTC 1 cut(s) 17
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 229, 260
Tsp45I GTSAC 1 cut(s) 64
TspGWI ACGGA 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 376
XbaI TCTAGA 1 cut(s) 292
XspI CTAG 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.