Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Reverse (-)

47961561 .. 47979712

Gene Structure 18152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG298700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTAAGCTATTCCGGCTCATATTGCTTTTCTAAAGGGAAGGCAAGGAACCTTGTGAAAGTACTAGTATCTTGCTTAGAAACTAGGCATCTGCAAAATCTTCAGCCAGCTATTAACACTGCAGTTCTCCCCTGCTCATTTAAGAGAAAAGGCAATGCAATTTCCAGCTGCATTGCTGGCACAACATCAGATTTCTTAATCAAGGTTGGCTACTCTTTGACGATAGTTCGAAAGATCATGCAGTCTATTGGTTTCATTGGGCCTGGAGTGTCATTGTTGTGCTTGAACTATGCCAACACACCCACGGCTACAGCGGTACTCCTTACAGCAGTCTTATGTTTGAGCACTTTCAGTCAACCTGGCTTTCTCCTCAATATACAAGATGCTGCTGGTTGCATAATTAGAGGTTGCAATGGATTTCCTCTAGTGGCTGAGTCTAGGAATATTGGCTCTGCTAATGTCTCAGCTGCTGAGTGTGCTGCTCTTAAGGATGTTGTTCCTGAAGCCAACAAAGGGATTGGACTTGAGATAAGTAGGCAACAATTGCTTCTAAACGAGTTGGGGGTGGTTTCTGGGTGGAGCCTGGATCCGGAATCTTTGAAGGATATGAGGTTTTGTAAGAGGCGATACTGGGAATTTCTTCCTAAGAATATCGAAGGTCCTAGTGTGTTGGGTATTGCCGACAGCGATGGTGATCCACCCCTGGGGTCTCAGGTCAATGCTGATGACTGGGTTAACACAGGAAGAGAATGGCCGGTTCTAATGGTAGGCTACTGGTTTCAATCGGATATGTGGCGTTGCTATATAGCTGCAACGTATGGCGGAGGAGGTGGTGATTTGGCCTTTGGTGGTTGCAGACCGGCTGACAAGGATGATCGCGGTGGCTCTACCATCGTTGGGCGAGGTGGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

304

Amino Acids

32.46

Weight (kDa)

8.22

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	879
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	3 cut(s)	314, 822, 879
AclWI	GGATC	3 cut(s)	581, 594, 689
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	2 cut(s)	86, 522
AfaI	GTAC	2 cut(s)	63, 318
AfiI	CCNNNNNNNGG	4 cut(s)	513, 589, 704, 897
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	3 cut(s)	286, 601, 782
AhlI	ACTAGT	1 cut(s)	64
AjnI	CCWGG	4 cut(s)	262, 358, 582, 702
AluBI	AGCT	5 cut(s)	9, 110, 168, 467, 809
AluI	AGCT	5 cut(s)	9, 110, 168, 467, 809
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	2 cut(s)	466, 714
AlwI	GGATC	3 cut(s)	581, 594, 689
AlwNI	CAGNNNCTG	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	3 cut(s)	260, 752, 840
ApeKI	GCWGC	5 cut(s)	168, 386, 467, 479, 809
ApoI	RAATTY	1 cut(s)	635
Asp700I	GAANNNNTTC	1 cut(s)	639
AspS9I	GGNCC	2 cut(s)	260, 659
AsuHPI	GGTGA	2 cut(s)	704, 845
AsuII	TTCGAA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	659
BamHI	GGATCC	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	5 cut(s)	155, 373, 454, 466, 796
BccI	CCATC	2 cut(s)	683, 899
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	4 cut(s)	264, 360, 584, 704
BcoDI	GTCTC	2 cut(s)	466, 714
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	5 cut(s)	65, 84, 425, 438, 663
BfmI	CTRYAG	2 cut(s)	120, 309
BfrI	CTTAAG	1 cut(s)	485
BisI	GCNGC	5 cut(s)	169, 387, 468, 480, 810
BlsI	GCNGC	5 cut(s)	170, 388, 469, 481, 811
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	4 cut(s)	264, 360, 584, 704
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	2 cut(s)	260, 659
BmiI	GGNNCC	3 cut(s)	50, 581, 588
BmrFI	CCNGG	4 cut(s)	264, 360, 584, 704
BmrI	ACTGGG	2 cut(s)	640, 739
BmsI	GCATC	2 cut(s)	97, 373
BmuI	ACTGGG	2 cut(s)	640, 739
BpmI	CTGGAG	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	693
BsaI	GGTCTC	1 cut(s)	714
BsaJI	CCNNGG	3 cut(s)	303, 702, 703
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	4 cut(s)	513, 589, 704, 897
Bse118I	RCCGGY	2 cut(s)	754, 859
Bse1I	ACTGG	3 cut(s)	635, 734, 779
Bse3DI	GCAATG	3 cut(s)	160, 171, 418
Bse8I	GATNNNNATC	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	4 cut(s)	264, 360, 584, 704
BseDI	CCNNGG	3 cut(s)	303, 702, 703
BseGI	GGATG	2 cut(s)	496, 877
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	4 cut(s)	513, 589, 704, 897
BseMI	GCAATG	3 cut(s)	160, 171, 418
BseMII	CTCAG	4 cut(s)	423, 462, 477, 725
BseNI	ACTGG	3 cut(s)	635, 734, 779
BseRI	GAGGAG	2 cut(s)	359, 840
BseXI	GCAGC	5 cut(s)	155, 373, 454, 466, 796
Bsh1236I	CGCG	1 cut(s)	879
BshFI	GGCC	3 cut(s)	262, 754, 842
BsiHKAI	GWGCWC	1 cut(s)	347
BsiSI	CCGG	4 cut(s)	15, 590, 755, 860
BslI	CCNNNNNNNGG	4 cut(s)	513, 589, 704, 897
BsmAI	GTCTC	2 cut(s)	466, 714
BsnI	GGCC	3 cut(s)	262, 754, 842
Bso31I	GGTCTC	1 cut(s)	714
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	234, 586, 694, 874
BspACI	CCGC	3 cut(s)	314, 822, 879
BspANI	GGCC	3 cut(s)	262, 754, 842
BspCNI	CTCAG	4 cut(s)	424, 463, 476, 724
BspEI	TCCGGA	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	879
BspLI	GGNNCC	3 cut(s)	50, 581, 588
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	3 cut(s)	581, 594, 689
BspT104I	TTCGAA	1 cut(s)	229
BspTI	CTTAAG	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	714
BsrDI	GCAATG	3 cut(s)	160, 171, 418
BsrFI	RCCGGY	2 cut(s)	754, 859
BsrI	ACTGG	3 cut(s)	635, 734, 779
BssAI	RCCGGY	2 cut(s)	754, 859
BssECI	CCNNGG	3 cut(s)	303, 702, 703
BssMI	GATC	4 cut(s)	234, 586, 694, 874
Bst2UI	CCWGG	4 cut(s)	264, 360, 584, 704
Bst6I	CTCTTC	1 cut(s)	739
BstAFI	CTTAAG	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	108, 178
BstDEI	CTNAG	6 cut(s)	76, 432, 463, 471, 645, 711
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	496, 877
BstFNI	CGCG	1 cut(s)	879
BstKTI	GATC	4 cut(s)	237, 589, 697, 877
BstMAI	GTCTC	2 cut(s)	466, 714
BstMBI	GATC	4 cut(s)	234, 586, 694, 874
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 24, 177, 476, 544
BstNI	CCWGG	4 cut(s)	264, 360, 584, 704
BstSCI	CCNGG	4 cut(s)	262, 358, 582, 702
BstSFI	CTRYAG	2 cut(s)	120, 309
BstUI	CGCG	1 cut(s)	879
BstV1I	GCAGC	5 cut(s)	155, 373, 454, 466, 796
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	262, 754, 842
BtgI	CCRYGG	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	702
BtsCI	GGATG	2 cut(s)	496, 877
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	108, 178
CaiI	CAGNNNCTG	1 cut(s)	470
Cfr10I	RCCGGY	2 cut(s)	754, 859
Cfr13I	GGNCC	2 cut(s)	260, 659
Csp6I	GTAC	2 cut(s)	62, 317
CviAII	CATG	1 cut(s)	238
CviQI	GTAC	2 cut(s)	62, 317
DdeI	CTNAG	6 cut(s)	76, 432, 463, 471, 645, 711
DpnI	GATC	4 cut(s)	236, 588, 696, 876
DpnII	GATC	4 cut(s)	234, 586, 694, 874
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
EciI	GGCGGA	1 cut(s)	837
Eco31I	GGTCTC	1 cut(s)	714
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	2 cut(s)	86, 522
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRII	CCWGG	4 cut(s)	262, 358, 582, 702
FaeI	CATG	1 cut(s)	241
FatI	CATG	1 cut(s)	237
Fnu4HI	GCNGC	5 cut(s)	169, 387, 468, 480, 810
FokI	GGATG	2 cut(s)	503, 884
Fsp4HI	GCNGC	5 cut(s)	169, 387, 468, 480, 810
FspBI	CTAG	5 cut(s)	65, 84, 425, 438, 663
GluI	GCNGC	5 cut(s)	169, 387, 468, 480, 810
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	262, 754, 842
HapII	CCGG	4 cut(s)	15, 590, 755, 860
Hin1II	CATG	1 cut(s)	241
HincII	GTYRAC	2 cut(s)	356, 736
HindII	GTYRAC	2 cut(s)	356, 736
HinfI	GANTC	2 cut(s)	434, 593
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	4 cut(s)	15, 590, 755, 860
HphI	GGTGA	2 cut(s)	704, 845
Hpy166II	GTNNAC	2 cut(s)	356, 736
Hpy188I	TCNGA	2 cut(s)	190, 787
Hpy188III	TCNNGA	2 cut(s)	500, 590
Hpy8I	GTNNAC	2 cut(s)	356, 736
HpyAV	CCTTC	3 cut(s)	34, 595, 650
HpyCH4IV	ACGT	1 cut(s)	815
HpyCH4V	TGCA	9 cut(s)	94, 122, 158, 171, 241, 396, 411, 812, 855
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 24, 177, 476, 544
HpyF3I	CTNAG	6 cut(s)	76, 432, 463, 471, 645, 711
HpySE526I	ACGT	1 cut(s)	815
Hsp92II	CATG	1 cut(s)	241
Kpn2I	TCCGGA	1 cut(s)	589
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	4 cut(s)	234, 586, 694, 874
LmnI	GCTCC	1 cut(s)	579
Lsp1109I	GCAGC	5 cut(s)	155, 373, 454, 466, 796
LweI	GCATC	2 cut(s)	97, 373
MaeI	CTAG	5 cut(s)	65, 84, 425, 438, 663
MaeII	ACGT	1 cut(s)	815
MalI	GATC	4 cut(s)	236, 588, 696, 876
MboI	GATC	4 cut(s)	234, 586, 694, 874
MboII	GAAGA	3 cut(s)	92, 632, 756
MfeI	CAATTG	1 cut(s)	542
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	4 cut(s)	159, 399, 542, 635
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	8 cut(s)	380, 398, 432, 603, 615, 818, 821, 896
MroI	TCCGGA	1 cut(s)	589
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	5 cut(s)	114, 141, 197, 486, 735
MslI	CAYNNNNRTG	1 cut(s)	277
MspA1I	CMGCKG	3 cut(s)	168, 314, 467
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	4 cut(s)	15, 590, 755, 860
MspR9I	CCNGG	4 cut(s)	264, 360, 584, 704
MunI	CAATTG	1 cut(s)	542
MvaI	CCWGG	4 cut(s)	264, 360, 584, 704
MvnI	CGCG	1 cut(s)	879
MwoI	GCNNNNNNNGC	5 cut(s)	15, 24, 177, 476, 544
NdeII	GATC	4 cut(s)	234, 586, 694, 874
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	3 cut(s)	50, 581, 588
NspV	TTCGAA	1 cut(s)	229
PasI	CCCWGGG	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	5 cut(s)	170, 388, 469, 481, 811
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PpuMI	RGGWCCY	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	4 cut(s)	262, 358, 582, 702
PspGI	CCWGG	4 cut(s)	262, 358, 582, 702
PspN4I	GGNNCC	3 cut(s)	50, 581, 588
PspPI	GGNCC	2 cut(s)	260, 659
PspPPI	RGGWCCY	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	586
PvuII	CAGCTG	2 cut(s)	168, 467
RsaI	GTAC	2 cut(s)	63, 318
RsaNI	GTAC	2 cut(s)	62, 317
RseI	CAYNNNNRTG	1 cut(s)	277
SaqAI	TTAA	5 cut(s)	114, 141, 197, 486, 735
SatI	GCNGC	5 cut(s)	169, 387, 468, 480, 810
Sau3AI	GATC	4 cut(s)	234, 586, 694, 874
Sau96I	GGNCC	2 cut(s)	260, 659
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	4 cut(s)	264, 360, 584, 704
SduI	GDGCHC	1 cut(s)	347
SfaNI	GCATC	2 cut(s)	97, 373
SfcI	CTRYAG	2 cut(s)	120, 309
SfuI	TTCGAA	1 cut(s)	229
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	277
SmlI	CTYRAG	2 cut(s)	485, 524
SmoI	CTYRAG	2 cut(s)	485, 524
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	4 cut(s)	159, 399, 542, 635
SsiI	CCGC	3 cut(s)	314, 822, 879
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	5 cut(s)	65, 84, 425, 438, 663
StyD4I	CCNGG	4 cut(s)	262, 358, 582, 702
TaiI	ACGT	1 cut(s)	818
TaqI	TCGA	2 cut(s)	229, 654
TasI	AATT	4 cut(s)	159, 399, 542, 635
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	5 cut(s)	114, 141, 197, 486, 735
Tru9I	TTAA	5 cut(s)	114, 141, 197, 486, 735
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	5 cut(s)	168, 386, 467, 479, 809
TspDTI	ATGAA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	124
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	1 cut(s)	635
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	5 cut(s)	65, 84, 425, 438, 663
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.