RLG00000006899

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
11658885 .. 11660601
1717 bp
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UTR
Exon/CDS
Intron
RLM00000006899

Sequence Viewer

Length: 429 bp
ATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGACGTCGGCAGCTATCGGCAGGTGTGTGCAGGGCTGTCGGCAGCTTCTCGGCAGGGGCCTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGCTCGGCAGGTGTCGACAGGTCTCGGCAGGTGCTCGGCAGGTGTCGGCAGATGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGGCAGGTGTCGGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTCGCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGCTCGGCAGGTGTCAGGCAGGTGTCGGCAGCTTCCGATCAGAGCAGGTAATTAGTGAATCCAACATCAAGTGTAACATTCTTATTGCCAATGGAAGTCCGGGACATAATCTTCTCCCACCACCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

14.96

Weight (kDa)

11.76

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 145
AccII CGCG 1 cut(s) 271
AciI CCGC 1 cut(s) 271
AcyI GRCGYC 1 cut(s) 35
AleI CACNNNNGTG 1 cut(s) 424
AluBI AGCT 4 cut(s) 44, 76, 120, 330
AluI AGCT 4 cut(s) 44, 76, 120, 330
Alw21I GWGCWC 6 cut(s) 135, 166, 208, 251, 282, 303
Alw26I GTCTC 2 cut(s) 157, 294
AoxI GGCC 2 cut(s) 23, 88
ApeKI GCWGC 4 cut(s) 41, 73, 117, 327
AspS9I GGNCC 2 cut(s) 23, 88
AsuC2I CCSGG 1 cut(s) 399
Bbv12I GWGCWC 6 cut(s) 135, 166, 208, 251, 282, 303
BbvI GCAGC 4 cut(s) 53, 85, 129, 339
BcgI CGANNNNNNTGC 7 cut(s) 8, 30, 42, 50, 73, 84, 107
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 157, 294
BfaI CTAG 1 cut(s) 113
BisI GCNGC 5 cut(s) 42, 74, 118, 272, 328
BlsI GCNGC 5 cut(s) 43, 75, 119, 273, 329
Bme1390I CCNGG 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 23, 88
BmiI GGNNCC 2 cut(s) 24, 89
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 2 cut(s) 157, 294
BsaJI CCNNGG 2 cut(s) 26, 91
BseDI CCNNGG 2 cut(s) 26, 91
BseXI GCAGC 4 cut(s) 53, 85, 129, 339
BsgI GTGCAG 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 25, 90
BsiHKAI GWGCWC 6 cut(s) 135, 166, 208, 251, 282, 303
BsiSI CCGG 1 cut(s) 398
BslFI GGGAC 1 cut(s) 414
BsmAI GTCTC 2 cut(s) 157, 294
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 2 cut(s) 25, 90
Bso31I GGTCTC 2 cut(s) 157, 294
Bsp1286I GDGCHC 6 cut(s) 135, 166, 208, 251, 282, 303
Bsp143I GATC 1 cut(s) 335
BspACI CCGC 1 cut(s) 271
BspANI GGCC 2 cut(s) 25, 90
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 24, 89
BspTNI GGTCTC 2 cut(s) 157, 294
BssECI CCNNGG 2 cut(s) 26, 91
BssMI GATC 1 cut(s) 335
BssNI GRCGYC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 35
BstFNI CGCG 1 cut(s) 271
BstKTI GATC 1 cut(s) 338
BstMAI GTCTC 2 cut(s) 157, 294
BstMBI GATC 1 cut(s) 335
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 397
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 4 cut(s) 53, 85, 129, 339
BsuRI GGCC 2 cut(s) 25, 90
Cfr13I GGNCC 2 cut(s) 23, 88
CviJI RGCY 7 cut(s) 25, 44, 66, 76, 90, 120, 330
CviKI_1 RGCY 7 cut(s) 25, 44, 66, 76, 90, 120, 330
DpnI GATC 1 cut(s) 337
DpnII GATC 1 cut(s) 335
Eco31I GGTCTC 2 cut(s) 157, 294
EcoO109I RGGNCCY 2 cut(s) 23, 88
FaiI YATR 1 cut(s) 405
FaqI GGGAC 1 cut(s) 414
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 5 cut(s) 42, 74, 118, 272, 328
Fsp4HI GCNGC 5 cut(s) 42, 74, 118, 272, 328
FspBI CTAG 1 cut(s) 113
GluI GCNGC 5 cut(s) 42, 74, 118, 272, 328
HaeIII GGCC 2 cut(s) 25, 90
HapII CCGG 1 cut(s) 398
Hin1I GRCGYC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 146
HindII GTYRAC 1 cut(s) 146
HinfI GANTC 1 cut(s) 356
HpaII CCGG 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 335, 340
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 335
Lsp1109I GCAGC 4 cut(s) 53, 85, 129, 339
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 371
MalI GATC 1 cut(s) 337
MboI GATC 1 cut(s) 335
MboII GAAGA 1 cut(s) 401
MhlI GDGCHC 6 cut(s) 135, 166, 208, 251, 282, 303
MluCI AATT 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 2 cut(s) 36, 101
MslI CAYNNNNRTG 1 cut(s) 424
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 277
NciI CCSGG 1 cut(s) 399
NdeII GATC 1 cut(s) 335
NlaIV GGNNCC 2 cut(s) 24, 89
OliI CACNNNNGTG 1 cut(s) 424
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 397
PkrI GCNGC 5 cut(s) 43, 75, 119, 273, 329
PspN4I GGNNCC 2 cut(s) 24, 89
PspPI GGNCC 2 cut(s) 23, 88
RseI CAYNNNNRTG 1 cut(s) 424
SalI GTCGAC 1 cut(s) 144
SatI GCNGC 5 cut(s) 42, 74, 118, 272, 328
Sau3AI GATC 1 cut(s) 335
Sau96I GGNCC 2 cut(s) 23, 88
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 6 cut(s) 135, 166, 208, 251, 282, 303
SfaNI GCATC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 424
Sse9I AATT 1 cut(s) 348
SsiI CCGC 1 cut(s) 271
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 397
TaiI ACGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 145
TasI AATT 1 cut(s) 348
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 1 cut(s) 356
TseI GCWGC 4 cut(s) 41, 73, 117, 327
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 1 cut(s) 113
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.