RLG00000005544

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001117
Physical Location & Seq
Reverse (-)
68421107 .. 68422760
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005544

Sequence Viewer

Length: 717 bp
ATGGATAACAGTGCAGGCCTAGGCCTGTGGTTTCTCTTCTTTCTCTGTTTGACCGGTGCGAGTCCGACGGTGGAGCGGGCGGAGCTTTCTGATTCTGTTGGGATGGACTGGCTGGGTTTTTTTTACCGTGGTGGTGGGTTGAGGTGTGGTACCTCTGTCGGTGTTGCTTTTGGGGCAACACAGGTTTCTGGGTGGAGCCTGGATCCGAAATCTTTGACGGATCTGAGGTTTTGTAAGAGGCGATACTGGGAATTTCTTCCTCAGAATATCGGAGGTTCTCGTGCGTTGGGTCTTGCCAGCAGAGATGGTGATCCACCCCTGGGGTCTCGGGTCAGTGTTGATGACCTGGTTAACACAGGAAGAGAATGGACGATTCTAATGGTCGGCTACTGGTTTCGGTCGGATCTGTGGCGTTACTATGCAGCGGCGACGTATGGCGGAGGAGGCGGTGATCTAGACTTTAGTGGTTGCAGACCGGCTGATAAGGATGATCATAGTGGCTCTACAGTTGTTGGGCGAGGTGTGCCTGGTGGTCTGGAATTCCATGGAGAAAGTTATGGGGTGCCCTTAGCATATCTTGATTGGGTGGCCTTAGGATTTCCACACCTTGGGCTCTTTAGATCAGGCTTGCTTTGGATGGTGATGTGGACGTCGTGGGTTCGGGTAGAAATGGAAGGGGAAGGGGAGTCTGCTACTTCTCTTCCGGAAAGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

25.94

Weight (kDa)

4.87

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 653
Acc65I GGTACC 1 cut(s) 149
AccB1I GGYRCC 2 cut(s) 149, 562
AccB7I CCANNNNNTGG 1 cut(s) 608
AccBSI CCGCTC 1 cut(s) 76
AccIII TCCGGA 1 cut(s) 703
AciI CCGC 5 cut(s) 76, 80, 425, 438, 447
AclWI GGATC 5 cut(s) 197, 210, 228, 305, 411
AcsI RAATTY 2 cut(s) 251, 539
AcyI GRCGYC 1 cut(s) 650
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 2 cut(s) 320, 608
AgeI ACCGGT 1 cut(s) 53
AjnI CCWGG 4 cut(s) 198, 318, 345, 526
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 5 cut(s) 197, 210, 228, 305, 411
Ama87I CYCGRG 1 cut(s) 327
Aor13HI TCCGGA 1 cut(s) 703
AoxI GGCC 3 cut(s) 16, 22, 588
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 2 cut(s) 251, 539
AsiGI ACCGGT 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 255
Asp718I GGTACC 1 cut(s) 149
AspA2I CCTAGG 1 cut(s) 19
AsuHPI GGTGA 3 cut(s) 320, 461, 652
AvaI CYCGRG 1 cut(s) 327
AvrII CCTAGG 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 592
BaeGI GKGCMC 1 cut(s) 567
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BamHI GGATCC 1 cut(s) 202
BanI GGYRCC 2 cut(s) 149, 562
BanII GRGCYC 1 cut(s) 615
BauI CACGAG 1 cut(s) 279
BbvI GCAGC 1 cut(s) 434
BccI CCATC 3 cut(s) 97, 299, 631
BciT130I CCWGG 4 cut(s) 200, 320, 347, 528
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 2 cut(s) 20, 455
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 2 cut(s) 423, 426
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 2 cut(s) 424, 427
Bme1390I CCNGG 4 cut(s) 200, 320, 347, 528
BmeT110I CYCGRG 1 cut(s) 327
BmiI GGNNCC 4 cut(s) 151, 197, 204, 564
BmrFI CCNGG 4 cut(s) 200, 320, 347, 528
BmrI ACTGGG 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 568
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 650
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 6 cut(s) 19, 127, 318, 319, 544, 607
BsaWI WCCGGW 2 cut(s) 53, 703
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 608
Bse118I RCCGGY 2 cut(s) 53, 475
Bse1I ACTGG 3 cut(s) 113, 251, 395
Bse21I CCTNAGG 1 cut(s) 592
Bse8I GATNNNNATC 1 cut(s) 309
BseAI TCCGGA 1 cut(s) 703
BseBI CCWGG 4 cut(s) 200, 320, 347, 528
BseDI CCNNGG 6 cut(s) 19, 127, 318, 319, 544, 607
BseGI GGATG 3 cut(s) 108, 493, 642
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 320, 608
BseMII CTCAG 2 cut(s) 215, 275
BseNI ACTGG 3 cut(s) 113, 251, 395
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 1 cut(s) 434
BseYI CCCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 3 cut(s) 18, 24, 590
BshNI GGYRCC 2 cut(s) 149, 562
BshTI ACCGGT 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 3 cut(s) 54, 476, 704
BslI CCNNNNNNNGG 2 cut(s) 320, 608
BsmAI GTCTC 1 cut(s) 330
BsnI GGCC 3 cut(s) 18, 24, 590
Bso31I GGTCTC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 327
Bsp1286I GDGCHC 2 cut(s) 567, 615
Bsp13I TCCGGA 1 cut(s) 703
Bsp143I GATC 7 cut(s) 202, 220, 310, 403, 451, 490, 620
Bsp19I CCATGG 1 cut(s) 544
BspACI CCGC 5 cut(s) 76, 80, 425, 438, 447
BspANI GGCC 3 cut(s) 18, 24, 590
BspCNI CTCAG 2 cut(s) 216, 274
BspEI TCCGGA 1 cut(s) 703
BspLI GGNNCC 4 cut(s) 151, 197, 204, 564
BspPI GGATC 5 cut(s) 197, 210, 228, 305, 411
BspT107I GGYRCC 2 cut(s) 149, 562
BspTNI GGTCTC 1 cut(s) 330
BsrBI CCGCTC 1 cut(s) 76
BsrFI RCCGGY 2 cut(s) 53, 475
BsrI ACTGG 3 cut(s) 113, 251, 395
BssAI RCCGGY 2 cut(s) 53, 475
BssECI CCNNGG 6 cut(s) 19, 127, 318, 319, 544, 607
BssMI GATC 7 cut(s) 202, 220, 310, 403, 451, 490, 620
BssNI GRCGYC 1 cut(s) 650
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 3 cut(s) 19, 544, 607
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 4 cut(s) 200, 320, 347, 528
Bst4CI ACNGT 4 cut(s) 11, 70, 128, 508
Bst6I CTCTTC 3 cut(s) 41, 355, 705
BstACI GRCGYC 1 cut(s) 650
BstC8I GCNNGC 4 cut(s) 16, 78, 298, 629
BstDEI CTNAG 4 cut(s) 224, 261, 568, 592
BstDSI CCRYGG 2 cut(s) 127, 544
BstF5I GGATG 3 cut(s) 108, 493, 642
BstKTI GATC 7 cut(s) 205, 223, 313, 406, 454, 493, 623
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 7 cut(s) 202, 220, 310, 403, 451, 490, 620
BstMCI CGRYCG 1 cut(s) 401
BstMWI GCNNNNNNNGC 4 cut(s) 82, 173, 444, 523
BstNI CCWGG 4 cut(s) 200, 320, 347, 528
BstSCI CCNGG 4 cut(s) 198, 318, 345, 526
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 434
BstX2I RGATCY 3 cut(s) 202, 220, 403
BstYI RGATCY 3 cut(s) 202, 220, 403
Bsu36I CCTNAGG 1 cut(s) 592
BsuRI GGCC 3 cut(s) 18, 24, 590
BtgI CCRYGG 2 cut(s) 127, 544
BtsCI GGATG 3 cut(s) 108, 493, 642
BtsIMutI CAGTG 2 cut(s) 16, 340
Cac8I GCNNGC 4 cut(s) 16, 78, 298, 629
Cfr10I RCCGGY 2 cut(s) 53, 475
CsiI ACCWGGT 1 cut(s) 345
Csp6I GTAC 1 cut(s) 150
CspAI ACCGGT 1 cut(s) 53
CviAII CATG 1 cut(s) 545
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 4 cut(s) 224, 261, 568, 592
DpnI GATC 7 cut(s) 204, 222, 312, 405, 453, 492, 622
DpnII GATC 7 cut(s) 202, 220, 310, 403, 451, 490, 620
Eam1104I CTCTTC 3 cut(s) 41, 355, 705
EarI CTCTTC 3 cut(s) 41, 355, 705
EciI GGCGGA 2 cut(s) 95, 453
Eco130I CCWWGG 3 cut(s) 19, 544, 607
Eco147I AGGCCT 2 cut(s) 18, 24
Eco24I GRGCYC 1 cut(s) 615
Eco31I GGTCTC 1 cut(s) 330
Eco81I CCTNAGG 1 cut(s) 592
Eco88I CYCGRG 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 4 cut(s) 198, 318, 345, 526
EcoT14I CCWWGG 3 cut(s) 19, 544, 607
EcoT38I GRGCYC 1 cut(s) 615
ErhI CCWWGG 3 cut(s) 19, 544, 607
FaeI CATG 1 cut(s) 548
FaiI YATR 6 cut(s) 420, 435, 495, 546, 558, 574
FatI CATG 1 cut(s) 544
FauI CCCGC 1 cut(s) 69
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 423, 426
FokI GGATG 3 cut(s) 115, 500, 649
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 2 cut(s) 423, 426
FspBI CTAG 2 cut(s) 20, 455
GluI GCNGC 2 cut(s) 423, 426
GsaI CCCAGC 1 cut(s) 116
HaeIII GGCC 3 cut(s) 18, 24, 590
HapII CCGG 3 cut(s) 54, 476, 704
Hin1I GRCGYC 1 cut(s) 650
Hin1II CATG 1 cut(s) 548
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 4 cut(s) 61, 92, 373, 686
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 3 cut(s) 54, 476, 704
HphI GGTGA 3 cut(s) 320, 461, 652
Hpy166II GTNNAC 2 cut(s) 352, 648
Hpy188I TCNGA 7 cut(s) 66, 91, 207, 225, 264, 272, 403
Hpy188III TCNNGA 4 cut(s) 455, 536, 578, 704
Hpy8I GTNNAC 2 cut(s) 352, 648
Hpy99I CGWCG 3 cut(s) 70, 433, 655
HpyAV CCTTC 2 cut(s) 668, 674
HpyCH4III ACNGT 4 cut(s) 11, 70, 128, 508
HpyCH4IV ACGT 2 cut(s) 431, 650
HpyCH4V TGCA 3 cut(s) 14, 422, 471
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 173, 444, 523
HpyF3I CTNAG 4 cut(s) 224, 261, 568, 592
HpySE526I ACGT 2 cut(s) 431, 650
Hsp92I GRCGYC 1 cut(s) 650
Hsp92II CATG 1 cut(s) 548
Kpn2I TCCGGA 1 cut(s) 703
KpnI GGTACC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 490
KspAI GTTAAC 1 cut(s) 352
Kzo9I GATC 7 cut(s) 202, 220, 310, 403, 451, 490, 620
LmnI GCTCC 3 cut(s) 73, 82, 195
Lsp1109I GCAGC 1 cut(s) 434
MabI ACCWGGT 1 cut(s) 345
MaeI CTAG 2 cut(s) 20, 455
MaeII ACGT 2 cut(s) 431, 650
MaeIII GTNAC 1 cut(s) 413
MalI GATC 7 cut(s) 204, 222, 312, 405, 453, 492, 622
MbiI CCGCTC 1 cut(s) 76
MboI GATC 7 cut(s) 202, 220, 310, 403, 451, 490, 620
MboII GAAGA 4 cut(s) 28, 248, 372, 692
MflI RGATCY 3 cut(s) 202, 220, 403
MhlI GDGCHC 2 cut(s) 567, 615
MluCI AATT 2 cut(s) 251, 539
MlyI GAGTC 2 cut(s) 70, 695
MmeI TCCRAC 2 cut(s) 89, 381
MnlI CCTC 9 cut(s) 135, 163, 219, 231, 266, 270, 434, 437, 512
MroI TCCGGA 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 351, 715
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 3 cut(s) 54, 476, 704
MspR9I CCNGG 4 cut(s) 200, 320, 347, 528
MvaI CCWGG 4 cut(s) 200, 320, 347, 528
MwoI GCNNNNNNNGC 4 cut(s) 82, 173, 444, 523
NcoI CCATGG 1 cut(s) 544
NdeII GATC 7 cut(s) 202, 220, 310, 403, 451, 490, 620
NlaIII CATG 1 cut(s) 548
NlaIV GGNNCC 4 cut(s) 151, 197, 204, 564
PasI CCCWGGG 1 cut(s) 319
PceI AGGCCT 2 cut(s) 18, 24
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 92, 373
PflMI CCANNNNNTGG 1 cut(s) 608
PinAI ACCGGT 1 cut(s) 53
PkrI GCNGC 2 cut(s) 424, 427
PleI GAGTC 2 cut(s) 69, 694
PpsI GAGTC 2 cut(s) 69, 694
Psp6I CCWGG 4 cut(s) 198, 318, 345, 526
PspFI CCCAGC 1 cut(s) 112
PspGI CCWGG 4 cut(s) 198, 318, 345, 526
PspN4I GGNNCC 4 cut(s) 151, 197, 204, 564
PsuI RGATCY 3 cut(s) 202, 220, 403
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 351, 715
SatI GCNGC 2 cut(s) 423, 426
Sau3AI GATC 7 cut(s) 202, 220, 310, 403, 451, 490, 620
SchI GAGTC 2 cut(s) 70, 695
ScrFI CCNGG 4 cut(s) 200, 320, 347, 528
SduI GDGCHC 2 cut(s) 567, 615
SexAI ACCWGGT 1 cut(s) 345
SfcI CTRYAG 1 cut(s) 504
Sse9I AATT 2 cut(s) 251, 539
SseBI AGGCCT 2 cut(s) 18, 24
SsiI CCGC 5 cut(s) 76, 80, 425, 438, 447
SspMI CTAG 2 cut(s) 20, 455
StuI AGGCCT 2 cut(s) 18, 24
StyD4I CCNGG 4 cut(s) 198, 318, 345, 526
StyI CCWWGG 3 cut(s) 19, 544, 607
TaaI ACNGT 4 cut(s) 11, 70, 128, 508
TaiI ACGT 2 cut(s) 434, 653
TaqII GACCGA 1 cut(s) 387
TasI AATT 2 cut(s) 251, 539
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 2 cut(s) 92, 373
Tru1I TTAA 2 cut(s) 351, 715
Tru9I TTAA 2 cut(s) 351, 715
TscAI CASTG 2 cut(s) 16, 340
TseI GCWGC 1 cut(s) 422
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 2 cut(s) 16, 340
Van91I CCANNNNNTGG 1 cut(s) 608
XapI RAATTY 2 cut(s) 251, 539
XbaI TCTAGA 1 cut(s) 454
XmaJI CCTAGG 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 20, 455
ZraI GACGTC 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.