RLG00000011381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001117
Physical Location & Seq
Reverse (-)
9011297 .. 9012028
732 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011381

Sequence Viewer

Length: 732 bp
ATGGCCACTGCTAGCCTTATGGCTAAATGGATCTTACTTCTCGTCACTTTCATTCAATCGACAGTGCTATGTGGGGGTTATTTGGATTTCGGAGACGGTATATCAAGCCCAGAGCAACGTTTGGTTATTGACAAGGGTTGGTGGCTCGCAGAGACTCTGGTGTGGCTCTCTGATGGCTTTCAACTGGGGCTTCTTGGCCTAGATTTGGCTGCTACAGGTGGTTATGGTGATGGCAGCGACAATCTCAAAACGATGAAGAACGATGTGGTCGGGTTCAGAGGTGGACAGACTAGTGTTGGGGTGATTGCCGACAATTGTACTGTTCTGTTTCGATTTGTGTTCGTTGGAGAAGCTAACGACTGGGAAGGGCTGCTTCGGTCGAATTTGTGGCAGTGCTATGCGATGGCAACATATGGCGGAGGAGGTGGTGATTTGGAAATTGGTGGTTGCAAACCGATGGATAAGGATGGTCGCGGTGGTTCTAACATCTTTGGGCGAGGTGGTCTGCAATGTCGATGTCCTCTGGCAGCGGTGCAGGTTGCCGGTGGTGGTGGCCTGGAATTCCATGGAGAAAGCTGTGGGGTGCCATTAGCATATCTTGATTGGGTGCCCTTAGGGTTTCCACACCTCCGGCAATTTGGACCAGGCTTGCTTTGGATGATGATGTGGACGTCGTGGGCTCGGGTAGAAATGGAAGGGGAGTCTGCTACTCCTCCTTCGAAAAGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

25.97

Weight (kDa)

4.71

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 674
Acc36I ACCTGC 1 cut(s) 526
AccB1I GGYRCC 2 cut(s) 583, 607
AccII CGCG 1 cut(s) 474
AciI CCGC 3 cut(s) 417, 474, 530
AclI AACGTT 1 cut(s) 118
AclWI GGATC 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 382, 560
AcyI GRCGYC 1 cut(s) 671
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 2 cut(s) 56, 182
AhlI ACTAGT 1 cut(s) 290
AjnI CCWGG 2 cut(s) 555, 643
AluBI AGCT 2 cut(s) 353, 576
AluI AGCT 2 cut(s) 353, 576
Alw26I GTCTC 2 cut(s) 87, 146
AlwI GGATC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 681
AoxI GGCC 3 cut(s) 3, 196, 553
ApeKI GCWGC 4 cut(s) 209, 234, 370, 527
ApoI RAATTY 2 cut(s) 382, 560
AspS9I GGNCC 1 cut(s) 641
AsuHPI GGTGA 3 cut(s) 239, 313, 440
AsuII TTCGAA 1 cut(s) 719
AsuNHI GCTAGC 1 cut(s) 11
AvaI CYCGRG 1 cut(s) 681
AvaII GGWCC 1 cut(s) 641
AxyI CCTNAGG 1 cut(s) 613
BaeGI GKGCMC 1 cut(s) 612
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 583, 607
BanII GRGCYC 1 cut(s) 682
BbvI GCAGC 4 cut(s) 196, 246, 357, 539
BccI CCATC 5 cut(s) 167, 224, 397, 451, 461
BciT130I CCWGG 2 cut(s) 557, 645
BcoDI GTCTC 2 cut(s) 87, 146
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 3 cut(s) 12, 200, 291
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 526
BisI GCNGC 4 cut(s) 210, 235, 371, 528
BlsI GCNGC 4 cut(s) 211, 236, 372, 529
Bme1390I CCNGG 2 cut(s) 557, 645
Bme18I GGWCC 1 cut(s) 641
BmeT110I CYCGRG 1 cut(s) 681
BmgT120I GGNCC 1 cut(s) 641
BmiI GGNNCC 2 cut(s) 585, 609
BmrFI CCNGG 2 cut(s) 557, 645
BmrI ACTGGG 2 cut(s) 194, 370
BmtI GCTAGC 1 cut(s) 15
BmuI ACTGGG 2 cut(s) 194, 370
Bpu14I TTCGAA 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 565
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 2 cut(s) 189, 365
Bse21I CCTNAGG 1 cut(s) 613
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 2 cut(s) 557, 645
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 2 cut(s) 472, 663
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 515
BseNI ACTGG 2 cut(s) 189, 365
BseRI GAGGAG 2 cut(s) 435, 702
BseSI GKGCMC 1 cut(s) 612
BseXI GCAGC 4 cut(s) 196, 246, 357, 539
BsgI GTGCAG 1 cut(s) 554
Bsh1236I CGCG 1 cut(s) 474
Bsh1285I CGRYCG 1 cut(s) 380
BshFI GGCC 3 cut(s) 5, 198, 555
BshNI GGYRCC 2 cut(s) 583, 607
BsiEI CGRYCG 1 cut(s) 380
BsiHKCI CYCGRG 1 cut(s) 681
BsiSI CCGG 2 cut(s) 543, 631
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 87, 146
BsmBI CGTCTC 1 cut(s) 87
BsnI GGCC 3 cut(s) 5, 198, 555
BsoBI CYCGRG 1 cut(s) 681
Bsp119I TTCGAA 1 cut(s) 719
Bsp1286I GDGCHC 2 cut(s) 612, 682
Bsp143I GATC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 565
BspACI CCGC 3 cut(s) 417, 474, 530
BspANI GGCC 3 cut(s) 5, 198, 555
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 2 cut(s) 585, 609
BspMI ACCTGC 1 cut(s) 526
BspOI GCTAGC 1 cut(s) 15
BspPI GGATC 1 cut(s) 38
BspT104I TTCGAA 1 cut(s) 719
BspT107I GGYRCC 2 cut(s) 583, 607
BsrDI GCAATG 1 cut(s) 515
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 2 cut(s) 189, 365
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 1 cut(s) 30
BssNI GRCGYC 1 cut(s) 671
BssT1I CCWWGG 1 cut(s) 565
Bst2UI CCWGG 2 cut(s) 557, 645
Bst4CI ACNGT 3 cut(s) 64, 98, 322
BstACI GRCGYC 1 cut(s) 671
BstBI TTCGAA 1 cut(s) 719
BstC8I GCNNGC 3 cut(s) 13, 147, 650
BstDEI CTNAG 1 cut(s) 613
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 2 cut(s) 472, 663
BstFNI CGCG 1 cut(s) 474
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 2 cut(s) 87, 146
BstMBI GATC 1 cut(s) 30
BstMCI CGRYCG 1 cut(s) 380
BstNI CCWGG 2 cut(s) 557, 645
BstSCI CCNGG 2 cut(s) 555, 643
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 612
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 4 cut(s) 196, 246, 357, 539
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 613
BsuRI GGCC 3 cut(s) 5, 198, 555
BtgI CCRYGG 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 2 cut(s) 472, 663
BtsI GCAGTG 2 cut(s) 6, 398
BtsIMutI CAGTG 3 cut(s) 6, 69, 398
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 3 cut(s) 13, 147, 650
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 641
Csp6I GTAC 1 cut(s) 318
CviAII CATG 1 cut(s) 566
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 1 cut(s) 613
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 682
Eco47I GGWCC 1 cut(s) 641
Eco81I CCTNAGG 1 cut(s) 613
Eco88I CYCGRG 1 cut(s) 681
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 555, 643
EcoT14I CCWWGG 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 1 cut(s) 569
FaiI YATR 9 cut(s) 20, 70, 101, 225, 399, 412, 414, 567, 595
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 1 cut(s) 565
FauNDI CATATG 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 210, 235, 371, 528
FokI GGATG 2 cut(s) 479, 670
FriOI GRGCYC 1 cut(s) 682
Fsp4HI GCNGC 4 cut(s) 210, 235, 371, 528
FspBI CTAG 3 cut(s) 12, 200, 291
GluI GCNGC 4 cut(s) 210, 235, 371, 528
HaeIII GGCC 3 cut(s) 5, 198, 555
HapII CCGG 2 cut(s) 543, 631
Hin1I GRCGYC 1 cut(s) 671
Hin1II CATG 1 cut(s) 569
HinfI GANTC 2 cut(s) 154, 701
HpaII CCGG 2 cut(s) 543, 631
HphI GGTGA 3 cut(s) 239, 313, 440
Hpy166II GTNNAC 2 cut(s) 284, 669
Hpy188I TCNGA 3 cut(s) 92, 172, 278
Hpy188III TCNNGA 1 cut(s) 599
Hpy8I GTNNAC 2 cut(s) 284, 669
Hpy99I CGWCG 1 cut(s) 676
HpyAV CCTTC 3 cut(s) 359, 689, 726
HpyCH4III ACNGT 3 cut(s) 64, 98, 322
HpyCH4IV ACGT 2 cut(s) 118, 671
HpyCH4V TGCA 3 cut(s) 450, 508, 535
HpyF3I CTNAG 1 cut(s) 613
HpySE526I ACGT 2 cut(s) 118, 671
Hsp92I GRCGYC 1 cut(s) 671
Hsp92II CATG 1 cut(s) 569
Kzo9I GATC 1 cut(s) 30
Lsp1109I GCAGC 4 cut(s) 196, 246, 357, 539
MaeI CTAG 3 cut(s) 12, 200, 291
MaeII ACGT 2 cut(s) 118, 671
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 1 cut(s) 268
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 612, 682
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 313, 382, 438, 560, 635
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 148, 710
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 7 cut(s) 272, 413, 416, 491, 531, 638, 723
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 730
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 2 cut(s) 543, 631
MspR9I CCNGG 2 cut(s) 557, 645
MunI CAATTG 1 cut(s) 313
MvaI CCWGG 2 cut(s) 557, 645
MvnI CGCG 1 cut(s) 474
NcoI CCATGG 1 cut(s) 565
NdeI CATATG 1 cut(s) 412
NdeII GATC 1 cut(s) 30
NheI GCTAGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 569
NlaIV GGNNCC 2 cut(s) 585, 609
NmuCI GTSAC 1 cut(s) 43
NspV TTCGAA 1 cut(s) 719
PkrI GCNGC 4 cut(s) 211, 236, 372, 529
PleI GAGTC 2 cut(s) 148, 709
PpsI GAGTC 2 cut(s) 148, 709
Psp1406I AACGTT 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 555, 643
PspGI CCWGG 2 cut(s) 555, 643
PspN4I GGNNCC 2 cut(s) 585, 609
PspPI GGNCC 1 cut(s) 641
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 730
SatI GCNGC 4 cut(s) 210, 235, 371, 528
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 641
SchI GAGTC 2 cut(s) 148, 710
ScrFI CCNGG 2 cut(s) 557, 645
SduI GDGCHC 2 cut(s) 612, 682
SfcI CTRYAG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 719
SinI GGWCC 1 cut(s) 641
SpeI ACTAGT 1 cut(s) 290
Sse9I AATT 5 cut(s) 313, 382, 438, 560, 635
SsiI CCGC 3 cut(s) 417, 474, 530
SspMI CTAG 3 cut(s) 12, 200, 291
StyD4I CCNGG 2 cut(s) 555, 643
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 3 cut(s) 64, 98, 322
TaiI ACGT 2 cut(s) 121, 674
TaqI TCGA 5 cut(s) 59, 331, 380, 514, 719
TaqII GACCGA 1 cut(s) 366
TasI AATT 5 cut(s) 313, 382, 438, 560, 635
TatI WGTACW 1 cut(s) 317
Tru1I TTAA 1 cut(s) 730
Tru9I TTAA 1 cut(s) 730
TscAI CASTG 3 cut(s) 13, 69, 398
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 4 cut(s) 209, 234, 370, 527
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 40, 269
TspRI CASTG 3 cut(s) 13, 69, 398
VpaK11BI GGWCC 1 cut(s) 641
XapI RAATTY 2 cut(s) 382, 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 651
XspI CTAG 3 cut(s) 12, 200, 291
ZraI GACGTC 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.