Rroxscaffold_1G00017960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001117
Physical Location & Seq
Reverse (-)
22009182 .. 22010334
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017960.1

Sequence Viewer

Length: 351 bp
ATGGTAGGCTATTGGTTTCAGTCGGATCTGTGCCGTTGCTATATAGTAGCAACGTATGGTGGAAGAGGTGGTGATCTGGCCTTTGGTGGTTGCAGACCGGCTGACAAGGATGATCGTGGTGGCTCTACCGTCGTTGGGCGAAGTGGTCTGCGATGTCGAAGTCCTCTAGCAGCGGCGCAGGTTGCCGGTGGTGGTGGTCTGGAATTCCATGGAGAAAGCAATGGGGTGCCCTTAGGGTTTCCACACTTTGGGCTCTTTGGATCAGGCTTGCTTTGGATGGTGATGTGGACGTTGTGGGCTCAAGTAGAAATGGAAAGGGAGTCTGCTACTCCTCTTCCGGAAAGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.36

Weight (kDa)

5.56

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 226
AccB7I CCANNNNNTGG 1 cut(s) 248
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 1 cut(s) 173
AclWI GGATC 2 cut(s) 33, 268
AcsI RAATTY 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 135, 248
AlwI GGATC 2 cut(s) 33, 268
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 83, 292
AxyI CCTNAGG 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 2 cut(s) 255, 301
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 271
BceAI ACGGC 1 cut(s) 18
BfaI CTAG 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 2 cut(s) 171, 174
BlsI GCNGC 2 cut(s) 172, 175
BmiI GGNNCC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 1 cut(s) 337
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 248
Bse118I RCCGGY 2 cut(s) 97, 185
Bse21I CCTNAGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 226
BseAI TCCGGA 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 2 cut(s) 115, 282
BseLI CCNNNNNNNGG 2 cut(s) 135, 248
BseMI GCAATG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 1 cut(s) 182
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 226
BsiSI CCGG 3 cut(s) 98, 186, 338
BslI CCNNNNNNNGG 2 cut(s) 135, 248
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 3 cut(s) 231, 255, 301
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 4 cut(s) 25, 73, 112, 260
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 80
BspEI TCCGGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 2 cut(s) 33, 268
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 226
BsrFI RCCGGY 2 cut(s) 97, 185
BssAI RCCGGY 2 cut(s) 97, 185
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 4 cut(s) 25, 73, 112, 260
BssT1I CCWWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 2 cut(s) 58, 339
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 232
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 2 cut(s) 115, 282
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 4 cut(s) 28, 76, 115, 263
BstMBI GATC 4 cut(s) 25, 73, 112, 260
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 232
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 115, 282
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 269
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 2 cut(s) 97, 185
CviAII CATG 1 cut(s) 209
CviJI RGCY 7 cut(s) 9, 80, 101, 123, 253, 267, 299
CviKI_1 RGCY 7 cut(s) 9, 80, 101, 123, 253, 267, 299
DdeI CTNAG 1 cut(s) 232
DpnI GATC 4 cut(s) 27, 75, 114, 262
DpnII GATC 4 cut(s) 25, 73, 112, 260
Eam1104I CTCTTC 2 cut(s) 58, 339
EarI CTCTTC 2 cut(s) 58, 339
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 2 cut(s) 255, 301
Eco81I CCTNAGG 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 255, 301
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 1 cut(s) 212
FaiI YATR 4 cut(s) 42, 44, 57, 210
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 171, 174
FokI GGATG 2 cut(s) 122, 289
FriOI GRGCYC 2 cut(s) 255, 301
Fsp4HI GCNGC 2 cut(s) 171, 174
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 171, 174
HaeIII GGCC 1 cut(s) 80
HapII CCGG 3 cut(s) 98, 186, 338
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 212
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 1 cut(s) 320
HpaII CCGG 3 cut(s) 98, 186, 338
HphI GGTGA 2 cut(s) 83, 292
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 200, 338
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 53, 290
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 2 cut(s) 53, 290
Hsp92II CATG 1 cut(s) 212
HspAI GCGC 1 cut(s) 176
Kpn2I TCCGGA 1 cut(s) 337
Kzo9I GATC 4 cut(s) 25, 73, 112, 260
LpnPI CCDG 6 cut(s) 62, 111, 164, 185, 199, 249
Lsp1109I GCAGC 1 cut(s) 182
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 53, 290
MalI GATC 4 cut(s) 27, 75, 114, 262
MboI GATC 4 cut(s) 25, 73, 112, 260
MboII GAAGA 2 cut(s) 75, 326
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 3 cut(s) 231, 255, 301
MluCI AATT 1 cut(s) 203
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 3 cut(s) 59, 174, 342
MroI TCCGGA 1 cut(s) 337
MseI TTAA 1 cut(s) 349
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 3 cut(s) 98, 186, 338
MwoI GCNNNNNNNGC 1 cut(s) 182
NcoI CCATGG 1 cut(s) 208
NdeII GATC 4 cut(s) 25, 73, 112, 260
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 228
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 2 cut(s) 172, 175
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 25
SaqAI TTAA 1 cut(s) 349
SatI GCNGC 2 cut(s) 171, 174
Sau3AI GATC 4 cut(s) 25, 73, 112, 260
SchI GAGTC 1 cut(s) 329
SduI GDGCHC 3 cut(s) 231, 255, 301
SetI ASST 4 cut(s) 56, 70, 183, 293
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 173
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 2 cut(s) 56, 293
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 203
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 349
Tru9I TTAA 1 cut(s) 349
TseI GCWGC 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 248
XapI RAATTY 1 cut(s) 203
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.