Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Forward (+)

5249183 .. 5253420

Gene Structure 4238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGACGTCGGCAGCTATCGGCAGGTGTCTGCAGGGCTGTCGGCAGCTTCTCGGCAGGGGCCTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATAGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGCTGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTCTCGGCAGCTGCTCGGCAGGTGTCGGCAGGTCTCGGCAGGTCTCGGCAGGAGGCTTGCAGGGGCTGTCGGCAGGTCTCGGCAGCTTCTCGGCAGATCTCGGCAGCTACTCGGCAGCTGTCGGCAGGGCTCGCAGGGGGCAGGCACAGGGCAGGCACAGGCAGGGGCCGGTTCGGATTTTCCGACGGCCGGTTCAGAAATCCGACGCCTACGTCCAGATCAGCGTGGGCCTGGGCCTGTTTGTGGTGTTGCTGCTCATCGTCCCGGTGCTGCACTTCGTCTACATCCAAGGCTGGGTCGGGTTGCACGCTAGGTTTTACGTCACGATTGCGGCTGTTGCACTTTCGGGTCTGGCTGATGCATTGGTGGAAGGTTTGCTAATCGGCGCAGCCGGTGAGTTGCCTGAGAAGTATATGCGAGCCACTGTAGCAGGCACTGCTGATTCAGTTGTTTTATTTCAATATGTAGTTGTTTCAAGAATAGCACTCATGAAACAGAGGAAGATATTGAATCCGGCCAGCTATGATCAGAAAGTTCAGAAACTCCACCATCACAGGAGCCGAGTAACAATGTCAATGTTGATGCACAAACAGCATAGCAGGATTGGAACCAATGCTATGAAACTTTCGACTATCGAATGGAAGTTGTTAATGGAACTGGCAGCTGCATTGGAGGTCAGTGTAGTATTTGCCAGGAGAAGTTTGAGGAAGACTAAGAAGATGAGTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

353

Amino Acids

37.88

Weight (kDa)

11.52

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	539
AatII	GACGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	609
AciI	CCGC	1 cut(s)	659
AcoI	YGGCCR	2 cut(s)	515, 843
AcyI	GRCGYC	2 cut(s)	35, 534
AfiI	CCNNNNNNNGG	3 cut(s)	517, 571, 622
AgsI	TTSAA	3 cut(s)	788, 804, 838
AjnI	CCWGG	2 cut(s)	558, 1019
Alw21I	GWGCWC	7 cut(s)	135, 156, 188, 209, 240, 261, 323
Alw26I	GTCTC	5 cut(s)	273, 335, 366, 376, 410
AlwNI	CAGNNNCTG	2 cut(s)	394, 764
AoxI	GGCC	7 cut(s)	23, 88, 494, 515, 556, 562, 843
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	5 cut(s)	23, 88, 494, 556, 562
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	1043
Bbv12I	GWGCWC	7 cut(s)	135, 156, 188, 209, 240, 261, 323
BccI	CCATC	1 cut(s)	885
BceAI	ACGGC	1 cut(s)	530
BcgI	CGANNNNNNTGC	7 cut(s)	8, 30, 42, 50, 73, 84, 107
BciT130I	CCWGG	2 cut(s)	560, 1021
BclI	TGATCA	1 cut(s)	853
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	5 cut(s)	273, 335, 366, 376, 410
BfaI	CTAG	2 cut(s)	113, 639
BfmI	CTRYAG	3 cut(s)	59, 121, 753
BglII	AGATCT	1 cut(s)	424
Bme1390I	CCNGG	3 cut(s)	560, 593, 1021
BmgT120I	GGNCC	5 cut(s)	23, 88, 494, 556, 562
BmiI	GGNNCC	5 cut(s)	24, 89, 495, 887, 937
BmrFI	CCNGG	3 cut(s)	560, 593, 1021
BmsI	GCATC	2 cut(s)	676, 900
BpiI	GAAGAC	1 cut(s)	1043
BpuMI	CCSGG	1 cut(s)	593
BsaHI	GRCGYC	2 cut(s)	35, 534
BsaI	GGTCTC	5 cut(s)	273, 335, 366, 376, 410
BsaJI	CCNNGG	4 cut(s)	26, 91, 559, 616
Bsc4I	CCNNNNNNNGG	3 cut(s)	517, 571, 622
Bse118I	RCCGGY	3 cut(s)	496, 517, 719
Bse1I	ACTGG	1 cut(s)	990
BseBI	CCWGG	2 cut(s)	560, 1021
BseDI	CCNNGG	4 cut(s)	26, 91, 559, 616
BseGI	GGATG	1 cut(s)	612
BseLI	CCNNNNNNNGG	3 cut(s)	517, 571, 622
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	1 cut(s)	990
BseX3I	CGGCCG	1 cut(s)	515
BseYI	CCCAGC	1 cut(s)	621
BsgI	GTGCAG	1 cut(s)	584
Bsh1285I	CGRYCG	1 cut(s)	518
BshFI	GGCC	7 cut(s)	25, 90, 496, 517, 558, 564, 845
BsiEI	CGRYCG	1 cut(s)	518
BsiHKAI	GWGCWC	7 cut(s)	135, 156, 188, 209, 240, 261, 323
BsiSI	CCGG	5 cut(s)	497, 518, 593, 720, 842
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	3 cut(s)	517, 571, 622
BsmAI	GTCTC	5 cut(s)	273, 335, 366, 376, 410
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	7 cut(s)	25, 90, 496, 517, 558, 564, 845
Bso31I	GGTCTC	5 cut(s)	273, 335, 366, 376, 410
Bsp1286I	GDGCHC	8 cut(s)	135, 156, 188, 209, 240, 261, 323, 460
Bsp143I	GATC	3 cut(s)	424, 546, 853
BspACI	CCGC	1 cut(s)	659
BspANI	GGCC	7 cut(s)	25, 90, 496, 517, 558, 564, 845
BspCNI	CTCAG	1 cut(s)	724
BspHI	TCATGA	1 cut(s)	816
BspLI	GGNNCC	5 cut(s)	24, 89, 495, 887, 937
BspMAI	CTGCAG	1 cut(s)	63
BspTNI	GGTCTC	5 cut(s)	273, 335, 366, 376, 410
BsrFI	RCCGGY	3 cut(s)	496, 517, 719
BsrI	ACTGG	1 cut(s)	990
BssAI	RCCGGY	3 cut(s)	496, 517, 719
BssECI	CCNNGG	4 cut(s)	26, 91, 559, 616
BssMI	GATC	3 cut(s)	424, 546, 853
BssNI	GRCGYC	2 cut(s)	35, 534
BssT1I	CCWWGG	1 cut(s)	616
Bst2UI	CCWGG	2 cut(s)	560, 1021
Bst4CI	ACNGT	1 cut(s)	754
BstACI	GRCGYC	2 cut(s)	35, 534
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	8 cut(s)	386, 460, 471, 482, 636, 747, 760, 847
BstDEI	CTNAG	2 cut(s)	732, 1041
BstF5I	GGATG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	3 cut(s)	427, 549, 856
BstMAI	GTCTC	5 cut(s)	273, 335, 366, 376, 410
BstMBI	GATC	3 cut(s)	424, 546, 853
BstMCI	CGRYCG	1 cut(s)	518
BstMWI	GCNNNNNNNGC	5 cut(s)	459, 665, 755, 764, 919
BstNI	CCWGG	2 cut(s)	560, 1021
BstSCI	CCNGG	3 cut(s)	558, 591, 1019
BstSFI	CTRYAG	3 cut(s)	59, 121, 753
BstV2I	GAAGAC	1 cut(s)	1043
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BstZI	CGGCCG	1 cut(s)	515
BsuRI	GGCC	7 cut(s)	25, 90, 496, 517, 558, 564, 845
BtsCI	GGATG	1 cut(s)	612
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	3 cut(s)	750, 762, 1012
Cac8I	GCNNGC	8 cut(s)	386, 460, 471, 482, 636, 747, 760, 847
CaiI	CAGNNNCTG	2 cut(s)	394, 764
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	1 cut(s)	716
Cfr10I	RCCGGY	3 cut(s)	496, 517, 719
Cfr13I	GGNCC	5 cut(s)	23, 88, 494, 556, 562
CseI	GACGC	1 cut(s)	542
CviAII	CATG	1 cut(s)	817
DdeI	CTNAG	2 cut(s)	732, 1041
DpnI	GATC	3 cut(s)	426, 548, 855
DpnII	GATC	3 cut(s)	424, 546, 853
DrdI	GACNNNNNNGTC	1 cut(s)	539
DseDI	GACNNNNNNGTC	1 cut(s)	539
EaeI	YGGCCR	2 cut(s)	515, 843
EagI	CGGCCG	1 cut(s)	515
EclXI	CGGCCG	1 cut(s)	515
Eco130I	CCWWGG	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	460
Eco31I	GGTCTC	5 cut(s)	273, 335, 366, 376, 410
Eco52I	CGGCCG	1 cut(s)	515
EcoO109I	RGGNCCY	2 cut(s)	23, 88
EcoRII	CCWGG	2 cut(s)	558, 1019
EcoT14I	CCWWGG	1 cut(s)	616
EcoT22I	ATGCAT	1 cut(s)	691
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	1 cut(s)	820
FaiI	YATR	8 cut(s)	123, 741, 743, 792, 818, 852, 924, 947
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	1 cut(s)	816
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	609
FokI	GGATG	1 cut(s)	599
FriOI	GRGCYC	1 cut(s)	460
FspBI	CTAG	2 cut(s)	113, 639
GlaI	GCGC	1 cut(s)	715
GsaI	CCCAGC	1 cut(s)	625
HaeIII	GGCC	7 cut(s)	25, 90, 496, 517, 558, 564, 845
HapII	CCGG	5 cut(s)	497, 518, 593, 720, 842
HgaI	GACGC	1 cut(s)	542
HhaI	GCGC	1 cut(s)	716
Hin1I	GRCGYC	2 cut(s)	35, 534
Hin1II	CATG	1 cut(s)	820
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HinfI	GANTC	2 cut(s)	770, 838
HpaII	CCGG	5 cut(s)	497, 518, 593, 720, 842
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	6 cut(s)	504, 512, 525, 532, 858, 867
Hpy188III	TCNNGA	4 cut(s)	544, 652, 804, 817
Hpy8I	GTNNAC	1 cut(s)	610
Hpy99I	CGWCG	3 cut(s)	40, 516, 536
HpyAV	CCTTC	1 cut(s)	692
HpyCH4III	ACNGT	1 cut(s)	754
HpyCH4IV	ACGT	3 cut(s)	35, 540, 648
HpyCH4V	TGCA	8 cut(s)	61, 388, 601, 634, 668, 689, 913, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	459, 665, 755, 764, 919
HpyF3I	CTNAG	2 cut(s)	732, 1041
HpySE526I	ACGT	3 cut(s)	35, 540, 648
Hsp92I	GRCGYC	2 cut(s)	35, 534
Hsp92II	CATG	1 cut(s)	820
HspAI	GCGC	1 cut(s)	714
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	3 cut(s)	424, 546, 853
LmnI	GCTCC	1 cut(s)	885
LweI	GCATC	2 cut(s)	676, 900
MaeI	CTAG	2 cut(s)	113, 639
MaeII	ACGT	3 cut(s)	35, 540, 648
MaeIII	GTNAC	2 cut(s)	649, 892
MalI	GATC	3 cut(s)	426, 548, 855
MboI	GATC	3 cut(s)	424, 546, 853
MboII	GAAGA	3 cut(s)	841, 1048, 1057
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	8 cut(s)	135, 156, 188, 209, 240, 261, 323, 460
MmeI	TCCRAC	2 cut(s)	535, 555
MnlI	CCTC	6 cut(s)	36, 101, 374, 819, 994, 1026
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	1 cut(s)	977
MspA1I	CMGCKG	4 cut(s)	277, 339, 446, 992
MspI	CCGG	5 cut(s)	497, 518, 593, 720, 842
MspR9I	CCNGG	3 cut(s)	560, 593, 1021
MvaI	CCWGG	2 cut(s)	560, 1021
MwoI	GCNNNNNNNGC	5 cut(s)	459, 665, 755, 764, 919
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	3 cut(s)	424, 546, 853
NlaIII	CATG	1 cut(s)	820
NlaIV	GGNNCC	5 cut(s)	24, 89, 495, 887, 937
NmuCI	GTSAC	1 cut(s)	649
NsiI	ATGCAT	1 cut(s)	691
PagI	TCATGA	1 cut(s)	816
PcsI	WCGNNNNNNNCGW	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	770, 838
Psp6I	CCWGG	2 cut(s)	558, 1019
PspFI	CCCAGC	1 cut(s)	621
PspGI	CCWGG	2 cut(s)	558, 1019
PspN4I	GGNNCC	5 cut(s)	24, 89, 495, 887, 937
PspPI	GGNCC	5 cut(s)	23, 88, 494, 556, 562
PstI	CTGCAG	1 cut(s)	63
PstNI	CAGNNNCTG	2 cut(s)	394, 764
PsuI	RGATCY	1 cut(s)	424
PvuII	CAGCTG	4 cut(s)	277, 339, 446, 992
SaqAI	TTAA	1 cut(s)	977
Sau3AI	GATC	3 cut(s)	424, 546, 853
Sau96I	GGNCC	5 cut(s)	23, 88, 494, 556, 562
ScrFI	CCNGG	3 cut(s)	560, 593, 1021
SduI	GDGCHC	8 cut(s)	135, 156, 188, 209, 240, 261, 323, 460
SfaNI	GCATC	2 cut(s)	676, 900
SfcI	CTRYAG	3 cut(s)	59, 121, 753
SsiI	CCGC	1 cut(s)	659
SspMI	CTAG	2 cut(s)	113, 639
StyD4I	CCNGG	3 cut(s)	558, 591, 1019
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	1 cut(s)	754
TaiI	ACGT	3 cut(s)	38, 543, 651
TaqI	TCGA	2 cut(s)	956, 963
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	2 cut(s)	770, 838
Tru1I	TTAA	1 cut(s)	977
Tru9I	TTAA	1 cut(s)	977
TscAI	CASTG	3 cut(s)	757, 769, 1012
TseFI	GTSAC	1 cut(s)	649
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	2 cut(s)	833, 962
TspRI	CASTG	3 cut(s)	757, 769, 1012
XmiI	GTMKAC	1 cut(s)	609
XspI	CTAG	2 cut(s)	113, 639
ZraI	GACGTC	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.