Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002441.1

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Reverse (-)

36342 .. 37959

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002441.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgacatggttagatgagtacaaacaggctagaacttctcctattgcacctcaaccgaagactaaagcttgctggcagcctacacaacatggtgaagtaaaaattaatgttgatggagaattcttgcctactctaactcaagggggtcttggcgatgtaatcagagactataaaggtcaatttgttgtagcttttgcacaccctagtcagtttgtttcttcagccaagcaagtggagcttttagctatcagggagggggtggatttcattcagcatttgcagatcacgcttgctactgtagaaactgattgtcttgcagcagtacaagagatcacacatgagggtgctgccctttttgagtctggtagtattgttgatgatgtaggtggtaatggtgatggcagcggcaatctcaaaatggtgaagaacaatggggtcgggttcagaggtagacagactggtgttagggtgattgccgacaactgtattgtactgcttcgaactgtgttcattggaaaggctaacgactgggaagggctatttcggtcggatctatggccgtgctatatggttgtgacgtatgcggcgcaggttgccggtggtgatggtctgaaattccatggagaaagctatggggtgcccttagcatttcctgattgggtgccattaggccttccataccttgggctagttggaccaggcttgctttggatggtgatgtggatgtcgtgggctcagccagaattggaaagggagtctgctactcctcttccgaaaactatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28 RVT_3

Protein Analysis

261

Amino Acids

28.49

Weight (kDa)

5.12

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AccB1I	GGYRCC	2 cut(s)	637, 661
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	451
AciI	CCGC	2 cut(s)	405, 584
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	2 cut(s)	119, 614
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	20, 324, 492
AfiI	CCNNNNNNNGG	1 cut(s)	683
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	5 cut(s)	68, 191, 238, 245, 630
AluI	AGCT	5 cut(s)	68, 191, 238, 245, 630
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	558
AoxI	GGCC	2 cut(s)	557, 670
ApeKI	GCWGC	4 cut(s)	76, 317, 347, 402
ApoI	RAATTY	2 cut(s)	119, 614
AseI	ATTAAT	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	6 cut(s)	104, 407, 433, 481, 614, 727
AsuII	TTCGAA	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	642
BanI	GGYRCC	2 cut(s)	637, 661
BanII	GRGCYC	1 cut(s)	736
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	88, 329, 334, 414
BccI	CCATC	4 cut(s)	107, 392, 599, 706
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	699
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	3 cut(s)	30, 204, 689
BfmI	CTRYAG	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	6 cut(s)	77, 318, 348, 403, 406, 585
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	6 cut(s)	78, 319, 349, 404, 407, 586
Bme1390I	CCNGG	1 cut(s)	699
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	2 cut(s)	639, 663
BmrFI	CCNGG	1 cut(s)	699
BmrI	ACTGGG	1 cut(s)	538
BmuI	ACTGGG	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	643
Bpu1102I	GCTNAGC	1 cut(s)	735
Bpu14I	TTCGAA	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	619, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	463, 533
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	2 cut(s)	619, 682
BseGI	GGATG	2 cut(s)	717, 729
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMII	CTCAG	1 cut(s)	749
BseNI	ACTGG	2 cut(s)	463, 533
BseRI	GAGGAG	1 cut(s)	756
BseSI	GKGCMC	1 cut(s)	642
BseXI	GCAGC	4 cut(s)	88, 329, 334, 414
Bsh1285I	CGRYCG	1 cut(s)	548
BshFI	GGCC	2 cut(s)	559, 672
BshNI	GGYRCC	2 cut(s)	637, 661
BsiEI	CGRYCG	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	597
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	559, 672
Bsp119I	TTCGAA	1 cut(s)	499
Bsp1286I	GDGCHC	2 cut(s)	642, 736
Bsp143I	GATC	3 cut(s)	282, 330, 550
Bsp1720I	GCTNAGC	1 cut(s)	735
Bsp19I	CCATGG	1 cut(s)	619
BspACI	CCGC	2 cut(s)	405, 584
BspANI	GGCC	2 cut(s)	559, 672
BspCNI	CTCAG	1 cut(s)	748
BspLI	GGNNCC	2 cut(s)	639, 663
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	558
BspT104I	TTCGAA	1 cut(s)	499
BspT107I	GGYRCC	2 cut(s)	637, 661
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	463, 533
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	2 cut(s)	619, 682
BssMI	GATC	3 cut(s)	282, 330, 550
BssT1I	CCWWGG	2 cut(s)	619, 682
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	3 cut(s)	298, 485, 505
Bst6I	CTCTTC	1 cut(s)	774
BstBI	TTCGAA	1 cut(s)	499
BstC8I	GCNNGC	4 cut(s)	70, 74, 291, 704
BstDEI	CTNAG	2 cut(s)	643, 735
BstDSI	CCRYGG	1 cut(s)	619
BstF5I	GGATG	2 cut(s)	717, 729
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	3 cut(s)	285, 333, 553
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	3 cut(s)	282, 330, 550
BstMCI	CGRYCG	1 cut(s)	548
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 286, 593
BstNI	CCWGG	1 cut(s)	699
BstSCI	CCNGG	1 cut(s)	697
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	642
BstV1I	GCAGC	4 cut(s)	88, 329, 334, 414
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	2 cut(s)	559, 672
BtgI	CCRYGG	1 cut(s)	619
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	717, 729
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	4 cut(s)	70, 74, 291, 704
CfoI	GCGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	695
Csp6I	GTAC	3 cut(s)	19, 323, 491
CviAII	CATG	4 cut(s)	6, 89, 338, 620
CviQI	GTAC	3 cut(s)	19, 323, 491
DdeI	CTNAG	2 cut(s)	643, 735
DpnI	GATC	3 cut(s)	284, 332, 552
DpnII	GATC	3 cut(s)	282, 330, 550
EaeI	YGGCCR	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco130I	CCWWGG	2 cut(s)	619, 682
Eco147I	AGGCCT	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	697
EcoT14I	CCWWGG	2 cut(s)	619, 682
EcoT38I	GRGCYC	1 cut(s)	736
ErhI	CCWWGG	2 cut(s)	619, 682
FaeI	CATG	4 cut(s)	9, 92, 341, 623
FalI	AAGNNNNNCTT	4 cut(s)	132, 164, 222, 254
FatI	CATG	4 cut(s)	5, 88, 337, 619
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	6 cut(s)	77, 318, 348, 403, 406, 585
FokI	GGATG	2 cut(s)	724, 736
FriOI	GRGCYC	1 cut(s)	736
Fsp4HI	GCNGC	6 cut(s)	77, 318, 348, 403, 406, 585
FspBI	CTAG	3 cut(s)	30, 204, 689
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	6 cut(s)	77, 318, 348, 403, 406, 585
HaeIII	GGCC	2 cut(s)	559, 672
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	4 cut(s)	9, 92, 341, 623
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	2 cut(s)	359, 755
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	6 cut(s)	104, 407, 433, 481, 614, 727
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	5 cut(s)	164, 446, 550, 612, 774
Hpy188III	TCNNGA	1 cut(s)	653
Hpy8I	GTNNAC	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	527, 683
HpyCH4III	ACNGT	3 cut(s)	298, 485, 505
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	4 cut(s)	47, 197, 280, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 286, 593
HpyF3I	CTNAG	2 cut(s)	643, 735
HpySE526I	ACGT	1 cut(s)	578
Hsp92II	CATG	4 cut(s)	9, 92, 341, 623
HspAI	GCGC	1 cut(s)	587
Kzo9I	GATC	3 cut(s)	282, 330, 550
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	4 cut(s)	88, 329, 334, 414
MaeI	CTAG	3 cut(s)	30, 204, 689
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	3 cut(s)	284, 332, 552
MboI	GATC	3 cut(s)	282, 330, 550
MboII	GAAGA	4 cut(s)	70, 210, 436, 761
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	2 cut(s)	642, 736
MluCI	AATT	5 cut(s)	102, 119, 179, 614, 743
MlyI	GAGTC	2 cut(s)	368, 764
MmeI	TCCRAC	2 cut(s)	528, 673
MnlI	CCTC	5 cut(s)	60, 247, 334, 440, 777
MseI	TTAA	2 cut(s)	105, 784
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	3 cut(s)	235, 286, 593
NcoI	CCATGG	1 cut(s)	619
NdeII	GATC	3 cut(s)	282, 330, 550
NlaIII	CATG	4 cut(s)	9, 92, 341, 623
NlaIV	GGNNCC	2 cut(s)	639, 663
NmuCI	GTSAC	1 cut(s)	574
NspV	TTCGAA	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	672
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	6 cut(s)	78, 319, 349, 404, 407, 586
PleI	GAGTC	2 cut(s)	367, 763
PpsI	GAGTC	2 cut(s)	367, 763
PshBI	ATTAAT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	2 cut(s)	639, 663
PspPI	GGNCC	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	3 cut(s)	20, 324, 492
RsaNI	GTAC	3 cut(s)	19, 323, 491
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	105, 784
SatI	GCNGC	6 cut(s)	77, 318, 348, 403, 406, 585
Sau3AI	GATC	3 cut(s)	282, 330, 550
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	2 cut(s)	368, 764
ScrFI	CCNGG	1 cut(s)	699
SduI	GDGCHC	2 cut(s)	642, 736
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	499
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	5 cut(s)	102, 119, 179, 614, 743
SseBI	AGGCCT	1 cut(s)	672
SsiI	CCGC	2 cut(s)	405, 584
SspMI	CTAG	3 cut(s)	30, 204, 689
StuI	AGGCCT	1 cut(s)	672
StyD4I	CCNGG	1 cut(s)	697
StyI	CCWWGG	2 cut(s)	619, 682
TaaI	ACNGT	3 cut(s)	298, 485, 505
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	1 cut(s)	499
TaqII	GACCGA	1 cut(s)	534
TasI	AATT	5 cut(s)	102, 119, 179, 614, 743
TatI	WGTACW	3 cut(s)	18, 322, 490
TauI	GCSGC	2 cut(s)	408, 587
Tru1I	TTAA	2 cut(s)	105, 784
Tru9I	TTAA	2 cut(s)	105, 784
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	4 cut(s)	76, 317, 347, 402
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	2 cut(s)	256, 499
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	105
XapI	RAATTY	2 cut(s)	119, 614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	705
XmiI	GTMKAC	1 cut(s)	451
XspI	CTAG	3 cut(s)	30, 204, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.