Rroxscaffold_2G00082940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001117
Physical Location & Seq
Reverse (-)
5678729 .. 5679814
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082940.1

Sequence Viewer

Length: 165 bp
ATGGGCATGGTTCTTGTTCTTGCTGGGTATGGTTTGGGTTGTGGCCTTAGGTTTCTATACCTTGGGCTCTTTGGATCAGGCTTGCTTTGGATGGTGATGTGGATGTCATGGGCTCAGGTAGAATTGGAAGGGGAGTTTGCTACTCTTCTTCCGAAAAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

5.95

Weight (kDa)

4.78

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 82
AfaI GTAC 1 cut(s) 160
AlwI GGATC 1 cut(s) 82
AoxI GGCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 47
BanII GRGCYC 2 cut(s) 69, 115
BccI CCATC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 160
Bpu10I CCTNAGC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 61
Bse21I CCTNAGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 2 cut(s) 96, 108
BseMII CTCAG 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 23
BshFI GGCC 1 cut(s) 45
BsnI GGCC 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 69, 115
Bsp143I GATC 1 cut(s) 74
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 47, 114
BstF5I GGATG 2 cut(s) 96, 108
BstKTI GATC 1 cut(s) 77
BstMBI GATC 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 47
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 2 cut(s) 96, 108
Cac8I GCNNGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 159
CviAII CATG 2 cut(s) 7, 108
CviJI RGCY 4 cut(s) 45, 67, 81, 113
CviKI_1 RGCY 4 cut(s) 45, 67, 81, 113
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 2 cut(s) 47, 114
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 2 cut(s) 69, 115
Eco81I CCTNAGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 2 cut(s) 69, 115
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 2 cut(s) 10, 111
FaiI YATR 4 cut(s) 8, 30, 58, 109
FatI CATG 2 cut(s) 6, 107
FokI GGATG 2 cut(s) 103, 115
FriOI GRGCYC 2 cut(s) 69, 115
GsaI CCCAGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 45
Hin1II CATG 2 cut(s) 10, 111
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 47, 114
Hsp92II CATG 2 cut(s) 10, 111
Kzo9I GATC 1 cut(s) 74
LpnPI CCDG 3 cut(s) 9, 63, 101
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 2 cut(s) 137, 140
MhlI GDGCHC 2 cut(s) 69, 115
MluCI AATT 1 cut(s) 122
MseI TTAA 1 cut(s) 163
NdeII GATC 1 cut(s) 74
NlaIII CATG 2 cut(s) 10, 111
PspFI CCCAGC 1 cut(s) 23
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 163
Sau3AI GATC 1 cut(s) 74
ScaI AGTACT 1 cut(s) 160
SduI GDGCHC 2 cut(s) 69, 115
SetI ASST 3 cut(s) 53, 63, 120
SgeI CNNG 9 cut(s) 19, 26, 32, 36, 74, 90, 94, 120, 128
Sse9I AATT 1 cut(s) 122
StyI CCWWGG 1 cut(s) 61
TasI AATT 1 cut(s) 122
TatI WGTACW 1 cut(s) 158
Tru1I TTAA 1 cut(s) 163
Tru9I TTAA 1 cut(s) 163
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.