Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

42714270 .. 42715723

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG389600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCGGTGCTGGCGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCGTCGGGCAAGACTAGGGTGACTATTTTCTCTGGGACTCAGACCGGCATCGCTGAAGAAGGAGCAATGACAACTTGTATACCAGCTGGAACTGGTAAACTGCATTTCAGAGTAAGGGACTTCAACGCACAAGGTTGTAGAAAGGCTTCTTGGGTCACATTTAGTGAGCTTTCATGGTTTGGAGGGAGAAGAACGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

83

Amino Acids

9.08

Weight (kDa)

6.56

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	250
AccB1I	GGYRCC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	130
AciI	CCGC	3 cut(s)	5, 14, 20
AclI	AACGTT	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	126
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	2 cut(s)	137, 220
AluI	AGCT	2 cut(s)	137, 220
Asp700I	GAANNNNTTC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	181, 213
BfaI	CTAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	100, 182
BsmFI	GGGAC	2 cut(s)	100, 182
BspACI	CCGC	3 cut(s)	5, 14, 20
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	16
BspTI	CTTAAG	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	95
BssNAI	GTATAC	1 cut(s)	131
Bst1107I	GTATAC	1 cut(s)	131
BstAFI	CTTAAG	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 16
BstZ17I	GTATAC	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	95
CseI	GACGC	1 cut(s)	42
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	3 cut(s)	137, 197, 220
CviKI_1	RGCY	3 cut(s)	137, 197, 220
DdeI	CTNAG	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	126
FaeI	CATG	1 cut(s)	228
FaiI	YATR	3 cut(s)	131, 226, 250
FaqI	GGGAC	2 cut(s)	100, 182
FatI	CATG	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	20
HapII	CCGG	1 cut(s)	96
HgaI	GACGC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	228
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	131, 149
Hpy188I	TCNGA	2 cut(s)	93, 161
Hpy8I	GTNNAC	2 cut(s)	131, 149
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 16
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	5 cut(s)	69, 109, 123, 129, 147
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	70, 205
MboII	GAAGA	3 cut(s)	47, 119, 252
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	4 cut(s)	22, 25, 40, 227
MroXI	GAANNNNTTC	1 cut(s)	196
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	137
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	11, 16
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	70, 205
PdmI	GAANNNNTTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PsiI	TTATAA	1 cut(s)	250
Psp1406I	AACGTT	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	82
SetI	ASST	5 cut(s)	51, 139, 187, 222, 248
SfaNI	GCATC	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SsiI	CCGC	3 cut(s)	5, 14, 20
SspMI	CTAG	1 cut(s)	66
TaiI	ACGT	1 cut(s)	248
TauI	GCSGC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseFI	GTSAC	2 cut(s)	70, 205
Tsp45I	GTSAC	2 cut(s)	70, 205
TspDTI	ATGAA	1 cut(s)	213
Vha464I	CTTAAG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	196
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.