Rh1AG007100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001346
Physical Location & Seq
Forward (+)
1023163 .. 1023477
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG007100.1

Sequence Viewer

Length: 315 bp
ATGACTGCCAGTAGGAAGCTGACGTTTGGAACCGGGTGGGAACGATTTCGGTCAAACAATGGTTTAGACGGGACGCGATGCTGTGTTTTCACCTATATCGGTTGGTTGTGTTTCTCTGTACTTGTGTTCAACACAGAACATGGCACTCTGACAATGTGGGGGAACCAGCCGACCCCGGCAAGACCGCTGCCTGGCGTTCTTCTAGCTAATGTGCCTGCTGAGGTGGAACCGGCAGTGGAAGAAGAAGGAGCCAATGGGGATGATTTTGCAGAACTAATCACAGATGGGAATATGCCAGAACCTGGTCACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.36

Weight (kDa)

4.54

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 1 cut(s) 76
AciI CCGC 1 cut(s) 185
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 2 cut(s) 191, 302
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 2 cut(s) 190, 301
AluBI AGCT 2 cut(s) 19, 206
AluI AGCT 2 cut(s) 19, 206
AlwNI CAGNNNCTG 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 45
AsuC2I CCSGG 2 cut(s) 34, 176
AsuHPI GGTGA 2 cut(s) 82, 299
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 278
BciT130I CCWGG 2 cut(s) 192, 303
BcnI CCSGG 2 cut(s) 34, 176
BfaI CTAG 1 cut(s) 203
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 4 cut(s) 34, 176, 192, 303
BmiI GGNNCC 4 cut(s) 31, 164, 228, 250
BmrFI CCNGG 4 cut(s) 34, 176, 192, 303
BmsI GCATC 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 34, 176
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 302
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 2 cut(s) 192, 303
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 191, 302
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 76
BsiSI CCGG 3 cut(s) 33, 176, 230
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 2 cut(s) 191, 302
BsmFI GGGAC 1 cut(s) 85
BspACI CCGC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 76
BspLI GGNNCC 4 cut(s) 31, 164, 228, 250
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 192, 303
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 219
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 76
BstNI CCWGG 2 cut(s) 192, 303
BstPI GGTNACC 1 cut(s) 305
BstSCI CCNGG 4 cut(s) 32, 174, 190, 301
BstUI CGCG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 229
CseI GACGC 1 cut(s) 82
CsiI ACCWGGT 1 cut(s) 301
Csp6I GTAC 1 cut(s) 119
CviAII CATG 1 cut(s) 140
CviJI RGCY 4 cut(s) 19, 169, 206, 251
CviKI_1 RGCY 4 cut(s) 19, 169, 206, 251
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 190, 301
FaeI CATG 1 cut(s) 143
FaiI YATR 3 cut(s) 96, 141, 293
FaqI GGGAC 1 cut(s) 85
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 1 cut(s) 203
GluI GCNGC 1 cut(s) 188
HapII CCGG 3 cut(s) 33, 176, 230
HgaI GACGC 1 cut(s) 82
Hin1II CATG 1 cut(s) 143
HpaII CCGG 3 cut(s) 33, 176, 230
HphI GGTGA 2 cut(s) 82, 299
Hpy188I TCNGA 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 1 cut(s) 143
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 68
MabI ACCWGGT 1 cut(s) 301
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 305
MboII GAAGA 3 cut(s) 191, 251, 254
MnlI CCTC 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 3 cut(s) 33, 176, 230
MspR9I CCNGG 4 cut(s) 34, 176, 192, 303
MvaI CCWGG 2 cut(s) 192, 303
MvnI CGCG 1 cut(s) 76
NciI CCSGG 2 cut(s) 34, 176
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 4 cut(s) 31, 164, 228, 250
NmuCI GTSAC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 45
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 190, 301
PspEI GGTNACC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 190, 301
PspN4I GGNNCC 4 cut(s) 31, 164, 228, 250
PstNI CAGNNNCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SatI GCNGC 1 cut(s) 188
ScrFI CCNGG 4 cut(s) 34, 176, 192, 303
SetI ASST 6 cut(s) 21, 26, 95, 208, 225, 304
SexAI ACCWGGT 1 cut(s) 301
SfaNI GCATC 1 cut(s) 68
SsiI CCGC 1 cut(s) 185
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 4 cut(s) 32, 174, 190, 301
TaiI ACGT 1 cut(s) 26
TaqII GACCGA 1 cut(s) 39
TatI WGTACW 1 cut(s) 118
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 305
TspRI CASTG 1 cut(s) 240
Van91I CCANNNNNTGG 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.