Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

22424496 .. 22424963

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTTCTCGCTTCATTTTCCTTTCTCCCTCGCAACTCACAAGGAAGCAGCAGCCATTTCCATGGCTTTTTCATCTTCACTAATTCCTCCTCCAGTTCCGATCGAACTCCACCTCCGCAACCACGAAAAGCTCCTCAACTCCATTCGTCACCATCTCTCGGTCCTCACTCCCATCTCTCTCGCTCTCCGTCTCCGAGCTCCGGCGATCCGGCCTCCGCTTTCGATCTTCATCGGTTTTTCGGTAGCTCGGCCCGTAAAGCCGGATCAGTTGCTGCCTTGCTGGTTTATTCACTCCAGCCACACCACCGAATCTAGGATGTTAAAGAAGAACCGTGTGAATCGTAGGGCCACAAATGAAAGCTTGAAGAGAATAAAGCGATGGGAGGGAACAGAGGGAGTGCGAGATAGAGATCGAGGTTTTGAGAGGGAACTTGAAGCAATGGGAGATATAAAGCACCGAACATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006082 GO:0006508 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP_N Peptidase_M24

Protein Analysis

155

Amino Acids

17.77

Weight (kDa)

11.04

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	115, 215
AclWI	GGATC	2 cut(s)	199, 270
AfiI	CCNNNNNNNGG	3 cut(s)	157, 199, 312
AgsI	TTSAA	2 cut(s)	364, 434
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	4 cut(s)	130, 197, 245, 360
AluI	AGCT	4 cut(s)	130, 197, 245, 360
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	199, 270
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	3 cut(s)	209, 248, 345
ApeKI	GCWGC	3 cut(s)	47, 50, 271
AspS9I	GGNCC	3 cut(s)	160, 249, 345
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	3 cut(s)	59, 62, 258
BccI	CCATC	3 cut(s)	159, 179, 372
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	3 cut(s)	48, 51, 272
BlsI	GCNGC	3 cut(s)	49, 52, 273
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	3 cut(s)	160, 249, 345
BpmI	CTGGAG	2 cut(s)	75, 277
BsaBI	GATNNNNATC	2 cut(s)	227, 408
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 199, 312
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	2 cut(s)	227, 408
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	321
BseJI	GATNNNNATC	2 cut(s)	227, 408
BseLI	CCNNNNNNNGG	3 cut(s)	157, 199, 312
BseMI	GCAATG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	2 cut(s)	78, 122
BseXI	GCAGC	3 cut(s)	59, 62, 258
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	211, 250, 347
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	3 cut(s)	200, 208, 260
BslI	CCNNNNNNNGG	3 cut(s)	157, 199, 312
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsnI	GGCC	3 cut(s)	211, 250, 347
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	5 cut(s)	99, 204, 222, 262, 409
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	2 cut(s)	115, 215
BspANI	GGCC	3 cut(s)	211, 250, 347
BspPI	GGATC	2 cut(s)	199, 270
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	5 cut(s)	99, 204, 222, 262, 409
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	321
BstKTI	GATC	5 cut(s)	102, 207, 225, 265, 412
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	5 cut(s)	99, 204, 222, 262, 409
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	59, 62, 258
BstXI	CCANNNNNNTGG	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	211, 250, 347
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	271
Cfr13I	GGNCC	3 cut(s)	160, 249, 345
CviAII	CATG	1 cut(s)	61
DpnI	GATC	5 cut(s)	101, 206, 224, 264, 411
DpnII	GATC	5 cut(s)	99, 204, 222, 262, 409
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 449
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	48, 51, 272
FokI	GGATG	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	48, 51, 272
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	3 cut(s)	48, 51, 272
GsuI	CTGGAG	2 cut(s)	75, 277
HaeIII	GGCC	3 cut(s)	211, 250, 347
HapII	CCGG	3 cut(s)	200, 208, 260
Hin1II	CATG	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	2 cut(s)	308, 337
HpaII	CCGG	3 cut(s)	200, 208, 260
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	99, 194
HpyCH4III	ACNGT	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	5 cut(s)	99, 204, 222, 262, 409
LmnI	GCTCC	2 cut(s)	135, 202
LpnPI	CCDG	6 cut(s)	105, 213, 221, 265, 273, 307
Lsp1109I	GCAGC	3 cut(s)	59, 62, 258
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	5 cut(s)	101, 206, 224, 264, 411
MboI	GATC	5 cut(s)	99, 204, 222, 262, 409
MboII	GAAGA	4 cut(s)	66, 217, 337, 376
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	81
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	3 cut(s)	200, 208, 260
MwoI	GCNNNNNNNGC	1 cut(s)	256
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	5 cut(s)	99, 204, 222, 262, 409
NlaIII	CATG	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	308, 337
PkrI	GCNGC	3 cut(s)	49, 52, 273
Ple19I	CGATCG	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	199
PspPI	GGNCC	3 cut(s)	160, 249, 345
PstNI	CAGNNNCTG	1 cut(s)	271
PvuI	CGATCG	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	3 cut(s)	48, 51, 272
Sau3AI	GATC	5 cut(s)	99, 204, 222, 262, 409
Sau96I	GGNCC	3 cut(s)	160, 249, 345
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	6 cut(s)	114, 132, 199, 247, 362, 418
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	2 cut(s)	115, 215
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	3 cut(s)	102, 221, 412
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	308, 337
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	3 cut(s)	47, 50, 271
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	3 cut(s)	60, 217, 369
TspGWI	ACGGA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	160
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.