Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007421.1

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

7112 .. 9227

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007421.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgtttttggttgccaagaaaattgaaaatacaagtattgccttggataaatggcaacgtcctttctttggggataggcagaaggctatcaatgcaatccgtggtaggttagaggagttgttggggctgtctagctcaccggatttgcaggctgagaagaatgctttgttgaaaaggctagaagctttgctttcggaggaggagtcttattggtgtcaaagagctagagttgcatggctcaaggattgggacaggaatacaggtgattggtatgaggatgatgaagggttggaaaacattgtcgtgaattattttgagaatatgtataaagcaggagttgttgattctgttgcattggaggagactttacaggctatcactccttcaaaaatcgagagctccgcggctccgattcatttcgcagagaccgagggatttgaggtcggagatttcccgacggtgagtttgaatttggaattggtgcggaagctagagttggcgcttggggtttcgctgggaggctcggtgacagacatggcggtggtgataacgacgacttcaattgagttaataattgggtttttggtggtgctgtggcggagatcgtctgataagactaatcggttggtgaagcagctggcggtgccgcttaaggaggaggaagatgagtttaaggttgcatcgggcaagactagggtgactattttctctgggactcagaccggcactgctgaaggtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

247

Amino Acids

27.61

Weight (kDa)

4.8

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccII	CGCG	1 cut(s)	404
AciI	CCGC	7 cut(s)	402, 404, 484, 539, 598, 641, 647
AcsI	RAATTY	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	68
AflII	CTTAAG	1 cut(s)	650
AgsI	TTSAA	5 cut(s)	26, 172, 387, 469, 561
AjuI	GAANNNNNNNTTGG	4 cut(s)	461, 479, 493, 511
AluBI	AGCT	6 cut(s)	135, 185, 224, 399, 490, 637
AluI	AGCT	6 cut(s)	135, 185, 224, 399, 490, 637
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	2 cut(s)	356, 419
ApeKI	GCWGC	1 cut(s)	634
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
AspLEI	GCGC	1 cut(s)	502
AsuHPI	GGTGA	7 cut(s)	129, 275, 472, 538, 556, 640, 709
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	646
BcoDI	GTCTC	2 cut(s)	356, 419
BfaI	CTAG	5 cut(s)	132, 179, 225, 491, 693
BfoI	RGCGCY	1 cut(s)	503
BfrI	CTTAAG	1 cut(s)	650
BisI	GCNGC	3 cut(s)	405, 635, 647
BlsI	GCNGC	3 cut(s)	406, 636, 648
BmiI	GGNNCC	2 cut(s)	408, 645
BmsI	GCATC	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	4 cut(s)	42, 100, 402, 429
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	722
BseDI	CCNNGG	4 cut(s)	42, 100, 402, 429
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	144, 731
BseRI	GAGGAG	5 cut(s)	128, 212, 215, 374, 671
BseXI	GCAGC	1 cut(s)	646
BseYI	CCCAGC	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	643
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	2 cut(s)	140, 723
BslFI	GGGAC	2 cut(s)	263, 727
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	356, 419
BsmFI	GGGAC	2 cut(s)	263, 727
BsmI	GAATGC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	602
BspACI	CCGC	7 cut(s)	402, 404, 484, 539, 598, 641, 647
BspCNI	CTCAG	2 cut(s)	145, 730
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	2 cut(s)	408, 645
BspT107I	GGYRCC	1 cut(s)	643
BspTI	CTTAAG	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	722
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	4 cut(s)	42, 100, 402, 429
BssMI	GATC	1 cut(s)	602
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	460
BstAFI	CTTAAG	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	150, 639
BstDEI	CTNAG	2 cut(s)	153, 717
BstDSI	CCRYGG	2 cut(s)	100, 402
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	1 cut(s)	605
BstMAI	GTCTC	2 cut(s)	356, 419
BstMBI	GATC	1 cut(s)	602
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 230, 643
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	646
BtgI	CCRYGG	2 cut(s)	100, 402
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	1 cut(s)	726
Cac8I	GCNNGC	2 cut(s)	150, 639
CfoI	GCGC	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	722
Cfr42I	CCGCGG	1 cut(s)	405
CviAII	CATG	2 cut(s)	234, 535
DdeI	CTNAG	2 cut(s)	153, 717
DpnI	GATC	1 cut(s)	604
DpnII	GATC	1 cut(s)	602
EciI	GGCGGA	1 cut(s)	613
Ecl136II	GAGCTC	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	419
Eco53kI	GAGCTC	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	2 cut(s)	237, 538
FaiI	YATR	5 cut(s)	235, 273, 323, 327, 536
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	2 cut(s)	263, 727
FatI	CATG	2 cut(s)	233, 534
Fnu4HI	GCNGC	3 cut(s)	405, 635, 647
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	3 cut(s)	405, 635, 647
FspBI	CTAG	5 cut(s)	132, 179, 225, 491, 693
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	3 cut(s)	405, 635, 647
GsaI	CCCAGC	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	503
HapII	CCGG	2 cut(s)	140, 723
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	2 cut(s)	237, 538
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	4 cut(s)	203, 344, 412, 715
HpaII	CCGG	2 cut(s)	140, 723
HphI	GGTGA	7 cut(s)	129, 275, 472, 538, 556, 640, 709
Hpy188I	TCNGA	5 cut(s)	196, 411, 446, 610, 720
Hpy188III	TCNNGA	3 cut(s)	304, 394, 454
Hpy99I	CGWCG	2 cut(s)	460, 556
HpyAV	CCTTC	4 cut(s)	76, 278, 393, 728
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	95, 148, 233, 353, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 230, 643
HpyF3I	CTNAG	2 cut(s)	153, 717
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	237, 538
HspAI	GCGC	1 cut(s)	500
KspI	CCGCGG	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	602
LmnI	GCTCC	2 cut(s)	404, 412
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	1 cut(s)	689
MaeI	CTAG	5 cut(s)	132, 179, 225, 491, 693
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	526, 697
MalI	GATC	1 cut(s)	604
MboI	GATC	1 cut(s)	602
MboII	GAAGA	2 cut(s)	169, 674
MfeI	CAATTG	1 cut(s)	561
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	6 cut(s)	21, 307, 469, 476, 561, 573
MlyI	GAGTC	2 cut(s)	212, 709
MmeI	TCCRAC	2 cut(s)	270, 424
MseI	TTAA	3 cut(s)	569, 651, 672
MslI	CAYNNNNRTG	2 cut(s)	302, 539
MspA1I	CMGCKG	2 cut(s)	404, 637
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	2 cut(s)	140, 723
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	166
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	92, 230, 643
NdeII	GATC	1 cut(s)	602
NlaIII	CATG	2 cut(s)	237, 538
NlaIV	GGNNCC	2 cut(s)	408, 645
NmuCI	GTSAC	2 cut(s)	526, 697
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	344, 412
PkrI	GCNGC	3 cut(s)	406, 636, 648
PleI	GAGTC	2 cut(s)	211, 709
PpsI	GAGTC	2 cut(s)	211, 709
Psp124BI	GAGCTC	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	514
PspN4I	GGNNCC	2 cut(s)	408, 645
PvuII	CAGCTG	1 cut(s)	637
RseI	CAYNNNNRTG	2 cut(s)	302, 539
SacI	GAGCTC	1 cut(s)	401
SacII	CCGCGG	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	569, 651, 672
SatI	GCNGC	3 cut(s)	405, 635, 647
Sau3AI	GATC	1 cut(s)	602
SchI	GAGTC	2 cut(s)	212, 709
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	1 cut(s)	689
Sfr303I	CCGCGG	1 cut(s)	405
SgrBI	CCGCGG	1 cut(s)	405
SmiMI	CAYNNNNRTG	2 cut(s)	302, 539
SmlI	CTYRAG	2 cut(s)	239, 650
SmoI	CTYRAG	2 cut(s)	239, 650
Sse9I	AATT	6 cut(s)	21, 307, 469, 476, 561, 573
SsiI	CCGC	7 cut(s)	402, 404, 484, 539, 598, 641, 647
SspMI	CTAG	5 cut(s)	132, 179, 225, 491, 693
SstI	GAGCTC	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	393
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	6 cut(s)	21, 307, 469, 476, 561, 573
TauI	GCSGC	2 cut(s)	407, 649
TfiI	GAWTC	2 cut(s)	344, 412
Tru1I	TTAA	3 cut(s)	569, 651, 672
Tru9I	TTAA	3 cut(s)	569, 651, 672
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	2 cut(s)	526, 697
TseI	GCWGC	1 cut(s)	634
Tsp45I	GTSAC	2 cut(s)	526, 697
TspDTI	ATGAA	2 cut(s)	297, 404
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	733
Vha464I	CTTAAG	1 cut(s)	650
XapI	RAATTY	1 cut(s)	469
XspI	CTAG	5 cut(s)	132, 179, 225, 491, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.