RchiOBHm_Chr4g0403061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001346
Physical Location & Seq
Reverse (-)
22090748 .. 22092623
1876 bp
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UTR
Exon/CDS
Intron
PRQ37483

Sequence Viewer

Length: 177 bp
ATGCAGCAACGAGAAGAAGAGGACGGTCACTGTAGCAGTTTTGAGTCAACGCCGATATTTTCCGATTCCGGCAATCTCCGGCCACCAAATTGGCGTCGAAGGGTTCTTGGAATTTCTGGAAATTTTTCGCCGGCCAAATTGGAGCTCTTCCAGGGTAATGCCGCGAGCTACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.53

Weight (kDa)

5.19

Isoelectric Point (pI)

69.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 164
AciI CCGC 1 cut(s) 162
AcoI YGGCCR 2 cut(s) 80, 132
AcsI RAATTY 2 cut(s) 111, 121
AcyI GRCGYC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 145, 168
AluI AGCT 2 cut(s) 145, 168
Alw21I GWGCWC 1 cut(s) 147
AoxI GGCC 2 cut(s) 80, 132
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 2 cut(s) 111, 121
Asp700I GAANNNNTTC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 31
BisI GCNGC 2 cut(s) 5, 162
BlsI GCNGC 2 cut(s) 6, 163
Bme1390I CCNGG 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 130
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 82, 134
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 3 cut(s) 69, 79, 131
BsnI GGCC 2 cut(s) 82, 134
Bsp1286I GDGCHC 1 cut(s) 147
BspACI CCGC 1 cut(s) 162
BspANI GGCC 2 cut(s) 82, 134
BspFNI CGCG 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 151
BssNI GRCGYC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 26, 32
Bst6I CTCTTC 2 cut(s) 12, 152
BstACI GRCGYC 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 132, 166
BstFNI CGCG 1 cut(s) 164
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 31
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 90
BsuRI GGCC 2 cut(s) 82, 134
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 132, 166
Cfr10I RCCGGY 1 cut(s) 130
CseI GACGC 1 cut(s) 83
CviJI RGCY 4 cut(s) 82, 134, 145, 168
CviKI_1 RGCY 4 cut(s) 82, 134, 145, 168
EaeI YGGCCR 2 cut(s) 80, 132
Eam1104I CTCTTC 2 cut(s) 12, 152
EarI CTCTTC 2 cut(s) 12, 152
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 5, 162
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 5, 162
GluI GCNGC 2 cut(s) 5, 162
HaeIII GGCC 2 cut(s) 82, 134
HapII CCGG 3 cut(s) 69, 79, 131
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 2 cut(s) 44, 65
HpaII CCGG 3 cut(s) 69, 79, 131
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 117
Hpy8I GTNNAC 1 cut(s) 48
Hpy99I CGWCG 1 cut(s) 99
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 2 cut(s) 26, 32
HpyCH4V TGCA 1 cut(s) 4
Hsp92I GRCGYC 1 cut(s) 94
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 6 cut(s) 82, 92, 102, 137, 144, 164
Lsp1109I GCAGC 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 26
MboII GAAGA 3 cut(s) 26, 29, 139
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 4 cut(s) 88, 111, 121, 137
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 1 cut(s) 13
MroNI GCCGGC 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 1 cut(s) 175
MspI CCGG 3 cut(s) 69, 79, 131
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 164
NaeI GCCGGC 1 cut(s) 132
NgoMIV GCCGGC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 6, 163
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 175
SatI GCNGC 2 cut(s) 5, 162
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 147
SetI ASST 2 cut(s) 147, 170
SfcI CTRYAG 1 cut(s) 31
SgeI CNNG 8 cut(s) 23, 81, 91, 119, 129, 143, 163, 164
Sse9I AATT 4 cut(s) 88, 111, 121, 137
SsiI CCGC 1 cut(s) 162
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 26, 32
TaqI TCGA 1 cut(s) 97
TasI AATT 4 cut(s) 88, 111, 121, 137
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 175
Tru9I TTAA 1 cut(s) 175
TscAI CASTG 1 cut(s) 35
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 26
TspRI CASTG 1 cut(s) 35
XapI RAATTY 2 cut(s) 111, 121
XmnI GAANNNNTTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.