Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

60602305 .. 60609118

Gene Structure 6814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG459100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGATCTCATAAGCAAAGCAAGGACTCTGCCAGGACCTGTTAGGAGAGGCAACAATATCTTGGTACTGGATGCAAAGCCTCTTTTGAAGGAGGCCCTTCAAGCCGAAGTTGGACTGCCAGTGGATAGGGACATCCCATTAATAGGCTTCATTGGTAGGCTAGAGGAGCAGAAAGTGAAGGCAAGGGCCTTTAGCTGGTTGAACCCGTTGGTGGCGTCTTGTGCTTCAAAATCAATTATCCCGGAGCTCAATCTTGGTGATAGCATCGACCTCGATGGAGGTGGAGGAAGCGTAGTCCTGCTAGAAGCAGAGAATAATACCTTGGAGGAGGATGTGTCGTGGTCGGAGACAAGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000271 GO:0003674 GO:0003824 GO:0004373 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008194 GO:0009011 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009569 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017076 GO:0019252 GO:0019863 GO:0019865 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0036094 GO:0043036 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043531 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046527 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Glyco_transf_5 Glycos_transf_1

Protein Analysis

119

Amino Acids

12.78

Weight (kDa)

4.6

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	2 cut(s)	66, 355
AfiI	CCNNNNNNNGG	3 cut(s)	143, 195, 211
AgsI	TTSAA	4 cut(s)	88, 101, 202, 228
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	2 cut(s)	195, 247
AluI	AGCT	2 cut(s)	195, 247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	93, 186
AseI	ATTAAT	1 cut(s)	140
AspS9I	GGNCC	3 cut(s)	35, 94, 186
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BccI	CCATC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	2 cut(s)	161, 302
Bme1390I	CCNGG	2 cut(s)	33, 242
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	35, 94, 186
BmrFI	CCNGG	2 cut(s)	33, 242
BmsI	GCATC	2 cut(s)	61, 273
BpuMI	CCSGG	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	321
BsaXI	ACNNNNNCTCC	4 cut(s)	276, 306, 320, 350
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 195, 211
Bse1I	ACTGG	2 cut(s)	72, 119
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	3 cut(s)	76, 132, 337
BseLI	CCNNNNNNNGG	3 cut(s)	143, 195, 211
BseNI	ACTGG	2 cut(s)	72, 119
BseRI	GAGGAG	2 cut(s)	179, 341
BshFI	GGCC	2 cut(s)	95, 188
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	143, 195, 211
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	95, 188
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	4
BspANI	GGCC	2 cut(s)	95, 188
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	72, 119
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	215
BstF5I	GGATG	3 cut(s)	76, 132, 337
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 166, 221
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 240
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	95, 188
BtsCI	GGATG	3 cut(s)	76, 132, 337
BtsIMutI	CAGTG	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	35, 94, 186
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	65, 354
CviJI	RGCY	8 cut(s)	79, 95, 104, 147, 160, 188, 195, 247
CviKI_1	RGCY	8 cut(s)	79, 95, 104, 147, 160, 188, 195, 247
CviQI	GTAC	2 cut(s)	65, 354
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	3 cut(s)	35, 94, 186
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	321
FaiI	YATR	2 cut(s)	11, 358
FaqI	GGGAC	1 cut(s)	143
FokI	GGATG	3 cut(s)	83, 119, 344
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	161, 302
HaeIII	GGCC	2 cut(s)	95, 188
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	82, 107, 172
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 166, 221
Hsp92I	GRCGYC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	166, 244
LpnPI	CCDG	8 cut(s)	18, 45, 51, 53, 132, 181, 255, 311
LweI	GCATC	2 cut(s)	61, 273
MaeI	CTAG	2 cut(s)	161, 302
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	2 cut(s)	91, 324
MnlI	CCTC	9 cut(s)	41, 85, 90, 157, 272, 278, 281, 319, 322
MseI	TTAA	1 cut(s)	140
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	33, 242
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	101, 166, 221
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	240
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspPI	GGNCC	3 cut(s)	35, 94, 186
PspPPI	RGGWCCY	1 cut(s)	35
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	66, 355
RsaNI	GTAC	2 cut(s)	65, 354
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	3 cut(s)	35, 94, 186
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	33, 242
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	6 cut(s)	40, 197, 249, 273, 283, 323
SfaNI	GCATC	2 cut(s)	61, 273
SinI	GGWCC	1 cut(s)	35
Sse9I	AATT	1 cut(s)	234
SspMI	CTAG	2 cut(s)	161, 302
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	31, 240
StyI	CCWWGG	1 cut(s)	321
TaqI	TCGA	2 cut(s)	267, 273
TasI	AATT	1 cut(s)	234
TatI	WGTACW	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	139
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	35
VspI	ATTAAT	1 cut(s)	140
XspI	CTAG	2 cut(s)	161, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.