Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

41956211 .. 41960004

Gene Structure 3794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTGATAATTGGTTTTTTGGTGGTGCTGTGGCGGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGCGGTGCCACTTAAGGAGGAGGAAGATGAGTTTGAGGTTGTGTCGGGCAAGACTAGGGTTTGGAGGGAGAAGAACGTTATAAAGCCAACACTAGGAAAGAGACGTTGTAACTGTAGAAATGAGGTCTATCACACGCAAATCGGTCCTGGAATGTTCCAACAGATGACGGAACAGGAGGTGGTTTTCTATGAGGATGGTGAACCCATAATTGATGGAGAACCTGGAGATTTAAAAAGATGTAACTCCTCCCAATCTCCAATTAATGAGAGCTCAAAGCCCTTAAGAACCATCACTTCATCAAGTTTGCGAGATGGTTCCACTAAATTCTTCGATTTTACTGTTATTAGTAGTGGAGTTGTTGGCCTCCGCTATGCCCTGGAAGTGGCAAAACATGGATCTGTTGCTGTCATTACCAAGGCTGAGCCTCATGAAAGTAATACAAATTATGCTCAAGGTGGTGTTGGTGCTGTAATGTGCCCTTCGAATTCTGTGGAGAGTCATGTCCAGGACACCATTGTAGCAGGAGCTTATCTATGTGATGAGGAGACTGTCAGAGCTTTCATGGACCTTGTTCTGTTTTATGGCTCTCATGGACCTTGTTATGTTTTAAGGCTCTCATACATTGCTCTGTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

247

Amino Acids

27.4

Weight (kDa)

5.9

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	148 - 224	4.8e-12	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	109
AciI	CCGC	4 cut(s)	5, 64, 107, 472
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	428, 589
AfiI	CCNNNNNNNGG	2 cut(s)	197, 487
AflII	CTTAAG	2 cut(s)	116, 385
AgsI	TTSAA	1 cut(s)	27
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	4 cut(s)	250, 325, 480, 609
AluBI	AGCT	4 cut(s)	103, 375, 632, 662
AluI	AGCT	4 cut(s)	103, 375, 632, 662
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	2 cut(s)	199, 644
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	428, 589
AseI	ATTAAT	1 cut(s)	366
AspS9I	GGNCC	3 cut(s)	248, 670, 698
AsuHPI	GGTGA	3 cut(s)	22, 106, 314
AsuII	TTCGAA	1 cut(s)	587
AvaII	GGWCC	3 cut(s)	248, 670, 698
BaeGI	GKGCMC	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	4 cut(s)	293, 311, 401, 410
BciT130I	CCWGG	4 cut(s)	252, 327, 482, 611
BcoDI	GTCTC	2 cut(s)	199, 644
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	3 cut(s)	84, 159, 197
BfmI	CTRYAG	1 cut(s)	217
BfrI	CTTAAG	2 cut(s)	116, 385
BisI	GCNGC	1 cut(s)	101
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	4 cut(s)	252, 327, 482, 611
Bme18I	GGWCC	3 cut(s)	248, 670, 698
BmgT120I	GGNCC	3 cut(s)	248, 670, 698
BmiI	GGNNCC	2 cut(s)	111, 421
BmrFI	CCNGG	4 cut(s)	252, 327, 482, 611
BpmI	CTGGAG	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	480, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 487
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	4 cut(s)	252, 327, 482, 611
BseDI	CCNNGG	2 cut(s)	480, 519
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	197, 487
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	1 cut(s)	516
BseRI	GAGGAG	3 cut(s)	137, 340, 662
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	468
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	197, 487
BsmAI	GTCTC	2 cut(s)	199, 644
BsmBI	CGTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	587
Bsp1286I	GDGCHC	2 cut(s)	377, 584
Bsp143I	GATC	2 cut(s)	68, 500
Bsp1720I	GCTNAGC	1 cut(s)	525
BspACI	CCGC	4 cut(s)	5, 64, 107, 472
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	1 cut(s)	517
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	111, 421
BspPI	GGATC	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	587
BspT107I	GGYRCC	1 cut(s)	109
BspTI	CTTAAG	2 cut(s)	116, 385
BsrDI	GCAATG	1 cut(s)	726
BssECI	CCNNGG	2 cut(s)	480, 519
BssMI	GATC	2 cut(s)	68, 500
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	4 cut(s)	252, 327, 482, 611
Bst4CI	ACNGT	3 cut(s)	218, 445, 655
BstAFI	CTTAAG	2 cut(s)	116, 385
BstBI	TTCGAA	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	2 cut(s)	71, 503
BstMAI	GTCTC	2 cut(s)	199, 644
BstMBI	GATC	2 cut(s)	68, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	4 cut(s)	252, 327, 482, 611
BstSCI	CCNGG	4 cut(s)	250, 325, 480, 609
BstSFI	CTRYAG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	584
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	105
CciI	TCATGA	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	248, 670, 698
CviAII	CATG	5 cut(s)	497, 533, 605, 667, 695
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	2 cut(s)	70, 502
DpnII	GATC	2 cut(s)	68, 500
DraI	TTTAAA	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	3 cut(s)	248, 670, 698
Eco53kI	GAGCTC	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	589
EcoRII	CCWGG	4 cut(s)	250, 325, 480, 609
EcoT14I	CCWWGG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	5 cut(s)	500, 536, 608, 670, 698
FatI	CATG	5 cut(s)	496, 532, 604, 666, 694
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	3 cut(s)	84, 159, 197
GluI	GCNGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	468
Hin1II	CATG	5 cut(s)	500, 536, 608, 670, 698
HinfI	GANTC	1 cut(s)	601
HphI	GGTGA	3 cut(s)	22, 106, 314
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	76, 659
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	594
HpyCH4III	ACNGT	3 cut(s)	218, 445, 655
HpyCH4IV	ACGT	2 cut(s)	180, 208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	2 cut(s)	180, 208
Hsp92II	CATG	5 cut(s)	500, 536, 608, 670, 698
Kzo9I	GATC	2 cut(s)	68, 500
LmnI	GCTCC	1 cut(s)	629
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	3 cut(s)	84, 159, 197
MaeII	ACGT	2 cut(s)	180, 208
MaeIII	GTNAC	2 cut(s)	212, 344
MalI	GATC	2 cut(s)	70, 502
MboI	GATC	2 cut(s)	68, 500
MboII	GAAGA	3 cut(s)	140, 187, 424
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	2 cut(s)	377, 584
MluCI	AATT	7 cut(s)	27, 39, 312, 363, 428, 547, 589
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	286
MseI	TTAA	5 cut(s)	117, 335, 366, 386, 713
MspA1I	CMGCKG	1 cut(s)	103
MspCI	CTTAAG	2 cut(s)	116, 385
MspR9I	CCNGG	4 cut(s)	252, 327, 482, 611
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	4 cut(s)	252, 327, 482, 611
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	2 cut(s)	68, 500
NlaIII	CATG	5 cut(s)	500, 536, 608, 670, 698
NlaIV	GGNNCC	2 cut(s)	111, 421
NspV	TTCGAA	1 cut(s)	587
PagI	TCATGA	1 cut(s)	532
PfoI	TCCNGGA	2 cut(s)	250, 609
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	609
PshBI	ATTAAT	1 cut(s)	366
PsiI	TTATAA	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	377
Psp1406I	AACGTT	1 cut(s)	180
Psp6I	CCWGG	4 cut(s)	250, 325, 480, 609
PspGI	CCWGG	4 cut(s)	250, 325, 480, 609
PspN4I	GGNNCC	2 cut(s)	111, 421
PspPI	GGNCC	3 cut(s)	248, 670, 698
PsuI	RGATCY	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	377
SaqAI	TTAA	5 cut(s)	117, 335, 366, 386, 713
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	68, 500
Sau96I	GGNCC	3 cut(s)	248, 670, 698
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	4 cut(s)	252, 327, 482, 611
SduI	GDGCHC	2 cut(s)	377, 584
SfcI	CTRYAG	1 cut(s)	217
SfuI	TTCGAA	1 cut(s)	587
SinI	GGWCC	3 cut(s)	248, 670, 698
SmlI	CTYRAG	3 cut(s)	116, 385, 555
SmoI	CTYRAG	3 cut(s)	116, 385, 555
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	7 cut(s)	27, 39, 312, 363, 428, 547, 589
SsiI	CCGC	4 cut(s)	5, 64, 107, 472
SspMI	CTAG	3 cut(s)	84, 159, 197
SstI	GAGCTC	1 cut(s)	377
StyD4I	CCNGG	4 cut(s)	250, 325, 480, 609
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	3 cut(s)	218, 445, 655
TaiI	ACGT	2 cut(s)	183, 211
TaqI	TCGA	2 cut(s)	435, 587
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	7 cut(s)	27, 39, 312, 363, 428, 547, 589
Tru1I	TTAA	5 cut(s)	117, 335, 366, 386, 713
Tru9I	TTAA	5 cut(s)	117, 335, 366, 386, 713
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	390, 549, 655
TspGWI	ACGGA	1 cut(s)	287
Vha464I	CTTAAG	2 cut(s)	116, 385
VpaK11BI	GGWCC	3 cut(s)	248, 670, 698
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	2 cut(s)	428, 589
XspI	CTAG	3 cut(s)	84, 159, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.