Rmu_sc0000551.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000551.1
OG0001346
Physical Location & Seq
Reverse (-)
65860 .. 68410
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000551.1_g000015.1.cds

Sequence Viewer

Length: 513 bp
atgtcgttggaaagctctcttccctctcttcatttctatggtggtttggtgattgattctggactgtggagggtgcagcaacgagaagaagaggaccgtcactgtagcagatcgggatttccattgatttcctgcgattccggccgtctccggccaccaaattgggccacctcggatttcagggtgaaattcagggggggtcctgtcaagtatagcctggagtatgacaacaaaagaatcacaaccatcaacaagttgatcagcctactgcaaatggctgagagggataatgagattctcttgaacaacaatgccaggcccactaggacaaagaaaattcccgaggctaattatggaaaaatgaaaagcggaaagaactccagtgcaaaggggtttagacgtgctgatccctacccacatggcaacaatgcaccacgtggaaagggacatggggatcattggaacaacttgcaaaaggcacccaagagcatctccaatggagatgtcttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

170

Amino Acids

19.21

Weight (kDa)

9.91

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 478
AciI CCGC 1 cut(s) 369
AclWI GGATC 2 cut(s) 401, 462
AcoI YGGCCR 2 cut(s) 142, 152
AcsI RAATTY 2 cut(s) 188, 336
AcvI CACGTG 1 cut(s) 437
AdeI CACNNNGTG 1 cut(s) 437
AgsI TTSAA 1 cut(s) 304
AjiI CACGTC 1 cut(s) 401
AjnI CCWGG 2 cut(s) 216, 314
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 401, 462
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 4 cut(s) 142, 152, 165, 317
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 2 cut(s) 188, 336
AspS9I GGNCC 4 cut(s) 94, 165, 200, 318
AsuHPI GGTGA 2 cut(s) 61, 196
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 94, 200
BanI GGYRCC 1 cut(s) 478
BbrPI CACGTG 1 cut(s) 437
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 2 cut(s) 218, 316
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 218, 316
Bme18I GGWCC 2 cut(s) 94, 200
BmeT110I CYCGRG 1 cut(s) 341
BmgBI CACGTC 1 cut(s) 401
BmgT120I GGNCC 4 cut(s) 94, 165, 200, 318
BmiI GGNNCC 2 cut(s) 201, 480
BmrFI CCNGG 2 cut(s) 218, 316
BmsI GCATC 1 cut(s) 498
BpmI CTGGAG 2 cut(s) 239, 364
BsaAI YACGTR 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 171, 342
Bse1I ACTGG 1 cut(s) 381
BseBI CCWGG 2 cut(s) 218, 316
BseDI CCNNGG 2 cut(s) 171, 342
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 381
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 4 cut(s) 144, 154, 167, 319
BshNI GGYRCC 1 cut(s) 478
BsiEI CGRYCG 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 141, 151
BslFI GGGAC 1 cut(s) 459
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 4 cut(s) 144, 154, 167, 319
BsoBI CYCGRG 1 cut(s) 341
Bsp143I GATC 4 cut(s) 110, 258, 406, 454
BspACI CCGC 1 cut(s) 369
BspANI GGCC 4 cut(s) 144, 154, 167, 319
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 201, 480
BspPI GGATC 2 cut(s) 401, 462
BspT107I GGYRCC 1 cut(s) 478
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 171, 342
BssMI GATC 4 cut(s) 110, 258, 406, 454
Bst2UI CCWGG 2 cut(s) 218, 316
Bst4CI ACNGT 3 cut(s) 66, 98, 104
Bst6I CTCTTC 3 cut(s) 24, 33, 84
BstBAI YACGTR 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 279
BstKTI GATC 4 cut(s) 113, 261, 409, 457
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 110, 258, 406, 454
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 2 cut(s) 218, 316
BstSCI CCNGG 2 cut(s) 216, 314
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 162
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 4 cut(s) 144, 154, 167, 319
BtrI CACGTC 1 cut(s) 401
BtsIMutI CAGTG 2 cut(s) 100, 388
Cfr13I GGNCC 4 cut(s) 94, 165, 200, 318
CviAII CATG 2 cut(s) 419, 449
CviJI RGCY 9 cut(s) 15, 144, 154, 167, 216, 264, 278, 319, 347
CviKI_1 RGCY 9 cut(s) 15, 144, 154, 167, 216, 264, 278, 319, 347
DdeI CTNAG 1 cut(s) 279
DpnI GATC 4 cut(s) 112, 260, 408, 456
DpnII GATC 4 cut(s) 110, 258, 406, 454
DraIII CACNNNGTG 1 cut(s) 437
EaeI YGGCCR 2 cut(s) 142, 152
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 3 cut(s) 24, 33, 84
EarI CTCTTC 3 cut(s) 24, 33, 84
EclXI CGGCCG 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 94, 200
Eco52I CGGCCG 1 cut(s) 142
Eco72I CACGTG 1 cut(s) 437
Eco88I CYCGRG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 216, 314
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 2 cut(s) 422, 452
FaiI YATR 6 cut(s) 39, 213, 225, 354, 420, 450
FaqI GGGAC 1 cut(s) 459
FatI CATG 2 cut(s) 418, 448
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 1 cut(s) 324
GluI GCNGC 1 cut(s) 77
GsuI CTGGAG 2 cut(s) 239, 364
HaeIII GGCC 4 cut(s) 144, 154, 167, 319
HapII CCGG 2 cut(s) 141, 151
Hin1II CATG 2 cut(s) 422, 452
HinfI GANTC 4 cut(s) 56, 137, 237, 295
HpaII CCGG 2 cut(s) 141, 151
HphI GGTGA 2 cut(s) 61, 196
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 4 cut(s) 60, 114, 301, 341
HpyCH4III ACNGT 3 cut(s) 66, 98, 104
HpyCH4IV ACGT 2 cut(s) 400, 436
HpyCH4V TGCA 5 cut(s) 76, 271, 386, 431, 472
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 2 cut(s) 400, 436
Hsp92II CATG 2 cut(s) 422, 452
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 4 cut(s) 110, 258, 406, 454
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 498
MaeI CTAG 1 cut(s) 324
MaeII ACGT 2 cut(s) 400, 436
MaeIII GTNAC 1 cut(s) 98
MalI GATC 4 cut(s) 112, 260, 408, 456
MboI GATC 4 cut(s) 110, 258, 406, 454
MboII GAAGA 4 cut(s) 11, 20, 98, 101
MluCI AATT 4 cut(s) 160, 188, 336, 349
MnlI CCTC 6 cut(s) 34, 63, 85, 181, 276, 337
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 2 cut(s) 141, 151
MspR9I CCNGG 2 cut(s) 218, 316
MvaI CCWGG 2 cut(s) 218, 316
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 4 cut(s) 110, 258, 406, 454
NlaIII CATG 2 cut(s) 422, 452
NlaIV GGNNCC 2 cut(s) 201, 480
NmuCI GTSAC 1 cut(s) 98
PfeI GAWTC 4 cut(s) 56, 137, 237, 295
PkrI GCNGC 1 cut(s) 78
PmaCI CACGTG 1 cut(s) 437
PmlI CACGTG 1 cut(s) 437
Ppu21I YACGTR 1 cut(s) 437
PpuMI RGGWCCY 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 216, 314
PspCI CACGTG 1 cut(s) 437
PspGI CCWGG 2 cut(s) 216, 314
PspN4I GGNNCC 2 cut(s) 201, 480
PspPI GGNCC 4 cut(s) 94, 165, 200, 318
PspPPI RGGWCCY 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 36
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 4 cut(s) 110, 258, 406, 454
Sau96I GGNCC 4 cut(s) 94, 165, 200, 318
ScrFI CCNGG 2 cut(s) 218, 316
SetI ASST 4 cut(s) 17, 173, 403, 439
SfaNI GCATC 1 cut(s) 498
SfcI CTRYAG 1 cut(s) 103
SinI GGWCC 2 cut(s) 94, 200
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 4 cut(s) 160, 188, 336, 349
SsiI CCGC 1 cut(s) 369
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 216, 314
TaaI ACNGT 3 cut(s) 66, 98, 104
TaiI ACGT 2 cut(s) 403, 439
TasI AATT 4 cut(s) 160, 188, 336, 349
TfiI GAWTC 4 cut(s) 56, 137, 237, 295
TscAI CASTG 2 cut(s) 107, 388
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 20, 377
TspRI CASTG 2 cut(s) 107, 388
VpaK11BI GGWCC 2 cut(s) 94, 200
XapI RAATTY 2 cut(s) 188, 336
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.