Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

46585620 .. 46586150

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAAGTCATTCACCTACAATTTGGCAAAACATGGATCTGTTGTTGTCATTACCAAGGCCGAGCCTCATGAAAGTAATAATACAAATTATGCTCAAGGTGGTGTTGGTGCTGTACCGTGCCCTTCGGATTCTGTGGAGAGTCATGTCCAGGACACCATTGTAGCAGGAGCTTACCTATGTGATGAGGAGACTGTCGAGTATCTTATAGAACCAATTGTAAACGGGATTGGTGGATCGATCTACTTCTACTATATTGAGGCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

88

Amino Acids

9.5

Weight (kDa)

4.44

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	6 - 70	2.2e-08	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	43, 241
AfaI	GTAC	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	43, 241
AoxI	GGCC	2 cut(s)	57, 258
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	78
Bsa29I	ATCGAT	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	122
BshFI	GGCC	2 cut(s)	59, 260
BshVI	ATCGAT	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	59, 260
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	35, 233, 237
BspANI	GGCC	2 cut(s)	59, 260
BspDI	ATCGAT	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	67
BspPI	GGATC	2 cut(s)	43, 241
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	35, 233, 237
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	117, 193
BstKTI	GATC	3 cut(s)	38, 236, 240
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	35, 233, 237
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
Bsu15I	ATCGAT	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	59, 260
BsuTUI	ATCGAT	1 cut(s)	236
CciI	TCATGA	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	3 cut(s)	32, 68, 143
CviJI	RGCY	4 cut(s)	59, 64, 170, 260
CviKI_1	RGCY	4 cut(s)	59, 64, 170, 260
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	3 cut(s)	37, 235, 239
DpnII	GATC	3 cut(s)	35, 233, 237
Eco130I	CCWWGG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	3 cut(s)	35, 71, 146
FaiI	YATR	7 cut(s)	33, 69, 90, 144, 178, 206, 252
FatI	CATG	3 cut(s)	31, 67, 142
HaeIII	GGCC	2 cut(s)	59, 260
Hin1II	CATG	3 cut(s)	35, 71, 146
HinfI	GANTC	2 cut(s)	128, 139
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	2 cut(s)	117, 193
Hsp92II	CATG	3 cut(s)	35, 71, 146
Kzo9I	GATC	3 cut(s)	35, 233, 237
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	3 cut(s)	134, 150, 161
MalI	GATC	3 cut(s)	37, 235, 239
MboI	GATC	3 cut(s)	35, 233, 237
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	3 cut(s)	19, 85, 213
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	3 cut(s)	75, 178, 250
MroXI	GAANNNNTTC	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	35, 233, 237
NlaIII	CATG	3 cut(s)	35, 71, 146
NmeAIII	GCCGAG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	128
PfoI	TCCNGGA	1 cut(s)	147
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
Sau3AI	GATC	3 cut(s)	35, 233, 237
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	4 cut(s)	17, 100, 172, 177
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	3 cut(s)	19, 85, 213
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	117, 193
TaqI	TCGA	2 cut(s)	195, 236
TasI	AATT	3 cut(s)	19, 85, 213
TfiI	GAWTC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	17, 84
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.