Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001211.1

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

32794 .. 34321

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001211.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgtcggagaccgagggattcgaggtcggagatttcccgacggtgagtttgaatttggaattggtgcggaagctggagccggcgcttgggctttctctgggaggcttggtgacggacatggtggtggtgatagcgacgacttcaattgagttgataattgggtttttggtggtgctgtggcggagatcgtctgataagactagtcgggtggtgaagcagctggcggtgccgcttaaggaggaggaagatgagtttgaggttgcgtcaggcaagactagggtgactattttctctgggactcagaccggcaccgctgaaggtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

108

Amino Acids

11.69

Weight (kDa)

4.59

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	226, 308
AciI	CCGC	5 cut(s)	67, 181, 224, 230, 312
AcsI	RAATTY	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	86
AflII	CTTAAG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	52, 144
AhlI	ACTAGT	1 cut(s)	200
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	73, 220
AluI	AGCT	2 cut(s)	73, 220
Alw26I	GTCTC	1 cut(s)	2
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	52
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AspLEI	GCGC	1 cut(s)	85
AsuHPI	GGTGA	5 cut(s)	55, 121, 139, 223, 292
BanI	GGYRCC	2 cut(s)	226, 308
BbvI	GCAGC	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	2
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	2 cut(s)	201, 276
BfoI	RGCGCY	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	233
BisI	GCNGC	2 cut(s)	218, 230
BlsI	GCNGC	2 cut(s)	219, 231
BmiI	GGNNCC	3 cut(s)	78, 228, 310
BpmI	CTGGAG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	2 cut(s)	79, 305
BseDI	CCNNGG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	229
BshNI	GGYRCC	2 cut(s)	226, 308
BsiSI	CCGG	2 cut(s)	80, 306
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	310
Bso31I	GGTCTC	1 cut(s)	2
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	5 cut(s)	67, 181, 224, 230, 312
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	3 cut(s)	78, 228, 310
BspT107I	GGYRCC	2 cut(s)	226, 308
BspTI	CTTAAG	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	2
BsrFI	RCCGGY	2 cut(s)	79, 305
BssAI	RCCGGY	2 cut(s)	79, 305
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	43
BstAFI	CTTAAG	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	81, 222
BstDEI	CTNAG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	81, 222
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	2 cut(s)	79, 305
CseI	GACGC	1 cut(s)	252
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	5 cut(s)	73, 79, 91, 105, 220
CviKI_1	RGCY	5 cut(s)	73, 79, 91, 105, 220
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	2
FaeI	CATG	1 cut(s)	121
FaiI	YATR	1 cut(s)	119
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	218, 230
Fsp4HI	GCNGC	2 cut(s)	218, 230
FspBI	CTAG	2 cut(s)	201, 276
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	218, 230
GsuI	CTGGAG	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	86
HapII	CCGG	2 cut(s)	80, 306
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	2 cut(s)	18, 298
HpaII	CCGG	2 cut(s)	80, 306
HphI	GGTGA	5 cut(s)	55, 121, 139, 223, 292
Hpy188I	TCNGA	4 cut(s)	7, 29, 193, 303
Hpy188III	TCNNGA	1 cut(s)	37
Hpy99I	CGWCG	2 cut(s)	43, 139
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	7 cut(s)	59, 83, 93, 206, 252, 279, 319
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	201, 276
MaeIII	GTNAC	2 cut(s)	109, 280
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	1 cut(s)	257
MfeI	CAATTG	1 cut(s)	144
MluCI	AATT	4 cut(s)	52, 59, 144, 156
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	6 cut(s)	7, 16, 95, 232, 235, 250
MroNI	GCCGGC	1 cut(s)	79
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	220, 314
MspCI	CTTAAG	1 cut(s)	233
MspI	CCGG	2 cut(s)	80, 306
MunI	CAATTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	226
NaeI	GCCGGC	1 cut(s)	81
NdeII	GATC	1 cut(s)	185
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	3 cut(s)	78, 228, 310
NmuCI	GTSAC	2 cut(s)	109, 280
PdiI	GCCGGC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	219, 231
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PspN4I	GGNNCC	3 cut(s)	78, 228, 310
PvuII	CAGCTG	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	218, 230
Sau3AI	GATC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	292
SetI	ASST	5 cut(s)	27, 75, 222, 261, 322
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	4 cut(s)	52, 59, 144, 156
SsiI	CCGC	5 cut(s)	67, 181, 224, 230, 312
SspMI	CTAG	2 cut(s)	201, 276
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	21
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	4 cut(s)	52, 59, 144, 156
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseFI	GTSAC	2 cut(s)	109, 280
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	2 cut(s)	109, 280
TspGWI	ACGGA	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	52
XspI	CTAG	2 cut(s)	201, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.