Rorug07G0174600

belongs to the flavoprotein pyridine nucleotide cytochrome reductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
14394859 .. 14397064
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0174600.1

Sequence Viewer

Length: 1419 bp
ATGTGGGCTTTGTGCTTTGGAGCATTGGTACTTGTTATAAGCATTACTCATTGGGTTTACAGGTGGAGGAATCCCAAATGCAATGGCAAGCTTCCACCAGGTTCAATGGGATTGCCACTTATTGGGGAGACTTTACAGTTCTTCACTCCCAACACCTCTTCTGATATTCCTCCCTTCATCAAGAAAAGGATGGAAAGGTATGGGCCAATTTTCAGGACTAATTTGGTGGGAAGACCAGTAATAGTATCAACAGACCCGGATCTCAATTACTTTGTATTCCAACAAGAGGGTAATTTGTTTCATAGCTCATATCCTTATACCTTCACGGAGATTTTTGGGAGACAAAATGTGGGTAACTTGCATGGGATCACGTACAAGTACCTCAAGAACATAGTGCTCCATCTCTTTGGCCCTGAAAGTCTTAAAAAGATGATCCCAGAAATTGAAGAGACAGCACTCAGAAGATTACAACAATGGTCTTGTGAGGACACAATAGAATTCAAAGATGCATCTGCAAGTCTGATATTTGATCTCACCGCAAAGAAACTTATCAGTTATGACTCAGAAAAGTGCTCGGAGAAGAATTTACGCAAAAACTTCGTTGCATTCATACAAGGATTGATTTCCTTCCCTGTGGACATCCCTGGAACAGCTTATCACAAATGTTTACAGGGTAGGAAAAATGCAATGAGAATGTTGGTAAACCTGCTACAGGAAAGACGAGAAAAGCCGCGAAAGCAGCCTATAGATTTTTTCGATCACGTGCTTGAAGAACTCAAGAAAGAGGAAACGATGTTAACAGAAGAAATTTTTCTGGATTTAATGTTTGTACTGCTTTTCGCGAGCTTTGAAACAACTTCCCTAGCTCTAACATTAGCCATCAAGTTTCTTTCAGACCATCCTGCAGTGCTAAAGAAATTAACGGAAGAGCATGGGATGATCATAAAGCAAAGGGAAAATGCTGATGCTGGACTTACATGGAAAGAATACAAATCAATGACATTCACATTTCAGATCATCAACGAAACAGTTAGACTGGCAAATATAGTTCCAGCTATCTTTCGCAAAGCAATAAGAGAGATACAGTTTAAAGGACATACCATTCCAGCAGGTTGGGCAGTAATGGTTTGTCCCCCAGCCGTACACTTAAACCCTCAAAAATATGATGATCCTGTGGCCTTCAATCCAGGGAGATGGGAGGGAATGTTAACAAGTAGTGCATCAAAAAATTTCATGGCTTTTGGCGGTGGCATGAGATTCTGTGTTGGAACAGACTTTGCTAAGGTGCAGATGGCTGTATTTCTGCATTGCTTGGTGACCAAGTACAGGTGGCAAGCAGTGGGGGGAGGAAATATAGTCCGAACTCCGGGTTTACAATTCCCGGATGGTTTTCACATTCGAATACAGGAGAAAGAATAA

Protein Analysis

472

Amino Acids

54.07

Weight (kDa)

9.07

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 450 5.4e-63 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
Acc36I ACCTGC 2 cut(s) 714, 1100
AccB7I CCANNNNNTGG 1 cut(s) 122
AccII CGCG 2 cut(s) 733, 842
AciI CCGC 3 cut(s) 537, 731, 1245
AclWI GGATC 4 cut(s) 267, 374, 427, 1163
AcsI RAATTY 4 cut(s) 497, 583, 807, 1228
AcvI CACGTG 1 cut(s) 763
AfaI GTAC 6 cut(s) 30, 374, 380, 831, 1143, 1325
AfiI CCNNNNNNNGG 5 cut(s) 122, 286, 712, 1326, 1366
AgsI TTSAA 6 cut(s) 105, 446, 502, 770, 851, 1183
AjnI CCWGG 3 cut(s) 97, 643, 1186
AluBI AGCT 6 cut(s) 91, 306, 653, 846, 866, 1055
AluI AGCT 6 cut(s) 91, 306, 653, 846, 866, 1055
Alw21I GWGCWC 2 cut(s) 399, 575
Alw26I GTCTC 3 cut(s) 122, 334, 443
AlwI GGATC 4 cut(s) 267, 374, 427, 1163
AoxI GGCC 3 cut(s) 203, 409, 1176
ApeKI GCWGC 1 cut(s) 739
ApoI RAATTY 4 cut(s) 497, 583, 807, 1228
Asp700I GAANNNNTTC 1 cut(s) 810
AspS9I GGNCC 2 cut(s) 203, 410
AsuC2I CCSGG 3 cut(s) 257, 1368, 1382
AsuHPI GGTGA 2 cut(s) 526, 1327
AsuII TTCGAA 1 cut(s) 1399
BbrPI CACGTG 1 cut(s) 763
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 399, 575
BbvI GCAGC 1 cut(s) 751
BccI CCATC 7 cut(s) 184, 408, 887, 906, 1188, 1285, 1379
BceAI ACGGC 1 cut(s) 1124
BcgI CGANNNNNNTGC 2 cut(s) 580, 614
BciT130I CCWGG 3 cut(s) 99, 645, 1188
BclI TGATCA 1 cut(s) 939
BcnI CCSGG 3 cut(s) 257, 1368, 1382
BcoDI GTCTC 3 cut(s) 122, 334, 443
BfaI CTAG 1 cut(s) 863
BfmI CTRYAG 3 cut(s) 710, 744, 903
BfuAI ACCTGC 2 cut(s) 714, 1100
BisI GCNGC 2 cut(s) 731, 740
BlsI GCNGC 2 cut(s) 732, 741
Bme1390I CCNGG 6 cut(s) 99, 257, 645, 1188, 1368, 1382
BmgT120I GGNCC 2 cut(s) 203, 410
BmrFI CCNGG 6 cut(s) 99, 257, 645, 1188, 1368, 1382
BmsI GCATC 4 cut(s) 496, 518, 955, 1229
BpiI GAAGAC 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 1281
Bpu14I TTCGAA 1 cut(s) 1399
BpuEI CTTGAG 2 cut(s) 368, 761
BpuMI CCSGG 3 cut(s) 257, 1368, 1382
BsaAI YACGTR 2 cut(s) 372, 763
BsaJI CCNNGG 2 cut(s) 643, 1187
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 1190, 1220
Bsc4I CCNNNNNNNGG 5 cut(s) 122, 286, 712, 1326, 1366
Bse1I ACTGG 2 cut(s) 236, 1041
Bse3DI GCAATG 3 cut(s) 88, 693, 1306
BseBI CCWGG 3 cut(s) 99, 645, 1188
BseDI CCNNGG 2 cut(s) 643, 1187
BseGI GGATG 5 cut(s) 195, 639, 898, 942, 1390
BseLI CCNNNNNNNGG 5 cut(s) 122, 286, 712, 1326, 1366
BseMI GCAATG 3 cut(s) 88, 693, 1306
BseMII CTCAG 2 cut(s) 472, 576
BseNI ACTGG 2 cut(s) 236, 1041
BseXI GCAGC 1 cut(s) 751
BseYI CCCAGC 1 cut(s) 1135
BsgI GTGCAG 1 cut(s) 1307
Bsh1236I CGCG 2 cut(s) 733, 842
BshFI GGCC 3 cut(s) 205, 411, 1178
BsiHKAI GWGCWC 2 cut(s) 399, 575
BsiSI CCGG 3 cut(s) 257, 1367, 1382
BslFI GGGAC 1 cut(s) 1116
BslI CCNNNNNNNGG 5 cut(s) 122, 286, 712, 1326, 1366
BsmAI GTCTC 3 cut(s) 122, 334, 443
BsmFI GGGAC 1 cut(s) 1116
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 3 cut(s) 205, 411, 1178
Bsp119I TTCGAA 1 cut(s) 1399
Bsp1286I GDGCHC 2 cut(s) 399, 575
Bsp143I GATC 8 cut(s) 259, 366, 432, 529, 757, 939, 1014, 1168
Bsp68I TCGCGA 1 cut(s) 842
BspACI CCGC 3 cut(s) 537, 731, 1245
BspANI GGCC 3 cut(s) 205, 411, 1178
BspCNI CTCAG 2 cut(s) 471, 575
BspFNI CGCG 2 cut(s) 733, 842
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 2 cut(s) 714, 1100
BspPI GGATC 4 cut(s) 267, 374, 427, 1163
BspQI GCTCTTC 1 cut(s) 921
BspT104I TTCGAA 1 cut(s) 1399
BsrDI GCAATG 3 cut(s) 88, 693, 1306
BsrI ACTGG 2 cut(s) 236, 1041
BssECI CCNNGG 2 cut(s) 643, 1187
BssMI GATC 8 cut(s) 259, 366, 432, 529, 757, 939, 1014, 1168
Bst2UI CCWGG 3 cut(s) 99, 645, 1188
Bst4CI ACNGT 3 cut(s) 138, 1030, 1086
Bst6I CTCTTC 3 cut(s) 163, 441, 921
BstBAI YACGTR 2 cut(s) 372, 763
BstBI TTCGAA 1 cut(s) 1399
BstC8I GCNNGC 3 cut(s) 89, 844, 1335
BstDEI CTNAG 3 cut(s) 458, 562, 1281
BstEII GGTNACC 1 cut(s) 1315
BstENI CCTNNNNNAGG 1 cut(s) 710
BstF5I GGATG 5 cut(s) 195, 639, 898, 942, 1390
BstFNI CGCG 2 cut(s) 733, 842
BstKTI GATC 8 cut(s) 262, 369, 435, 532, 760, 942, 1017, 1171
BstMAI GTCTC 3 cut(s) 122, 334, 443
BstMBI GATC 8 cut(s) 259, 366, 432, 529, 757, 939, 1014, 1168
BstMWI GCNNNNNNNGC 3 cut(s) 736, 739, 1115
BstNI CCWGG 3 cut(s) 99, 645, 1188
BstPI GGTNACC 1 cut(s) 1315
BstSCI CCNGG 6 cut(s) 97, 255, 643, 1186, 1366, 1380
BstSFI CTRYAG 3 cut(s) 710, 744, 903
BstUI CGCG 2 cut(s) 733, 842
BstV1I GCAGC 1 cut(s) 751
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 3 cut(s) 407, 1113, 1194
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 3 cut(s) 205, 411, 1178
BtsCI GGATG 5 cut(s) 195, 639, 898, 942, 1390
BtsI GCAGTG 2 cut(s) 912, 1344
BtsIMutI CAGTG 2 cut(s) 912, 1344
BtuMI TCGCGA 1 cut(s) 842
BveI ACCTGC 2 cut(s) 714, 1100
Cac8I GCNNGC 3 cut(s) 89, 844, 1335
Cfr13I GGNCC 2 cut(s) 203, 410
CsiI ACCWGGT 1 cut(s) 97
Csp6I GTAC 6 cut(s) 29, 373, 379, 830, 1142, 1324
CviAII CATG 5 cut(s) 362, 932, 978, 1234, 1252
CviQI GTAC 6 cut(s) 29, 373, 379, 830, 1142, 1324
DdeI CTNAG 3 cut(s) 458, 562, 1281
DpnI GATC 8 cut(s) 261, 368, 434, 531, 759, 941, 1016, 1170
DpnII GATC 8 cut(s) 259, 366, 432, 529, 757, 939, 1014, 1168
DraI TTTAAA 1 cut(s) 1090
Eam1104I CTCTTC 3 cut(s) 163, 441, 921
EarI CTCTTC 3 cut(s) 163, 441, 921
Eco72I CACGTG 1 cut(s) 763
Eco91I GGTNACC 1 cut(s) 1315
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoO65I GGTNACC 1 cut(s) 1315
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 3 cut(s) 97, 643, 1186
EcoT22I ATGCAT 1 cut(s) 511
FaeI CATG 5 cut(s) 365, 935, 981, 1237, 1255
FaqI GGGAC 1 cut(s) 1116
FatI CATG 5 cut(s) 361, 931, 977, 1233, 1251
FbaI TGATCA 1 cut(s) 939
Fnu4HI GCNGC 2 cut(s) 731, 740
FokI GGATG 5 cut(s) 202, 626, 885, 949, 1397
Fsp4HI GCNGC 2 cut(s) 731, 740
FspBI CTAG 1 cut(s) 863
GluI GCNGC 2 cut(s) 731, 740
GsaI CCCAGC 1 cut(s) 1139
HaeIII GGCC 3 cut(s) 205, 411, 1178
HapII CCGG 3 cut(s) 257, 1367, 1382
Hin1II CATG 5 cut(s) 365, 935, 981, 1237, 1255
HincII GTYRAC 2 cut(s) 798, 1209
HindII GTYRAC 2 cut(s) 798, 1209
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 3 cut(s) 70, 560, 1257
HpaI GTTAAC 2 cut(s) 798, 1209
HpaII CCGG 3 cut(s) 257, 1367, 1382
HphI GGTGA 2 cut(s) 526, 1327
Hpy166II GTNNAC 8 cut(s) 58, 637, 668, 703, 798, 1144, 1209, 1373
Hpy188I TCNGA 8 cut(s) 163, 461, 522, 565, 577, 895, 1014, 1361
Hpy188III TCNNGA 6 cut(s) 181, 214, 385, 778, 815, 841
Hpy8I GTNNAC 8 cut(s) 58, 637, 668, 703, 798, 1144, 1209, 1373
HpyAV CCTTC 4 cut(s) 184, 331, 637, 1189
HpyCH4III ACNGT 3 cut(s) 138, 1030, 1086
HpyCH4IV ACGT 2 cut(s) 371, 762
HpyF10VI GCNNNNNNNGC 3 cut(s) 736, 739, 1115
HpyF3I CTNAG 3 cut(s) 458, 562, 1281
HpySE526I ACGT 2 cut(s) 371, 762
Hsp92II CATG 5 cut(s) 365, 935, 981, 1237, 1255
Ksp22I TGATCA 1 cut(s) 939
KspAI GTTAAC 2 cut(s) 798, 1209
Kzo9I GATC 8 cut(s) 259, 366, 432, 529, 757, 939, 1014, 1168
LguI GCTCTTC 1 cut(s) 921
LmnI GCTCC 2 cut(s) 20, 402
Lsp1109I GCAGC 1 cut(s) 751
LweI GCATC 4 cut(s) 496, 518, 955, 1229
MabI ACCWGGT 1 cut(s) 97
MaeI CTAG 1 cut(s) 863
MaeII ACGT 2 cut(s) 371, 762
MaeIII GTNAC 2 cut(s) 353, 1315
MalI GATC 8 cut(s) 261, 368, 434, 531, 759, 941, 1016, 1170
MboI GATC 8 cut(s) 259, 366, 432, 529, 757, 939, 1014, 1168
MboII GAAGA 9 cut(s) 133, 150, 243, 458, 474, 592, 782, 815, 938
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 2 cut(s) 399, 575
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 2 cut(s) 304, 1246
Mph1103I ATGCAT 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 7 cut(s) 423, 797, 821, 920, 1089, 1148, 1208
MspI CCGG 3 cut(s) 257, 1367, 1382
MspR9I CCNGG 6 cut(s) 99, 257, 645, 1188, 1368, 1382
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 3 cut(s) 99, 645, 1188
MvnI CGCG 2 cut(s) 733, 842
MwoI GCNNNNNNNGC 3 cut(s) 736, 739, 1115
NciI CCSGG 3 cut(s) 257, 1368, 1382
NdeII GATC 8 cut(s) 259, 366, 432, 529, 757, 939, 1014, 1168
NlaIII CATG 5 cut(s) 365, 935, 981, 1237, 1255
NmuCI GTSAC 1 cut(s) 1315
NruI TCGCGA 1 cut(s) 842
NsiI ATGCAT 1 cut(s) 511
NspV TTCGAA 1 cut(s) 1399
PciSI GCTCTTC 1 cut(s) 921
PctI GAATGC 1 cut(s) 605
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 2 cut(s) 70, 1257
PflMI CCANNNNNTGG 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 1380
PkrI GCNGC 2 cut(s) 732, 741
PleI GAGTC 1 cut(s) 554
PmaCI CACGTG 1 cut(s) 763
PmlI CACGTG 1 cut(s) 763
PpsI GAGTC 1 cut(s) 554
Ppu21I YACGTR 2 cut(s) 372, 763
PsiI TTATAA 1 cut(s) 38
Psp6I CCWGG 3 cut(s) 97, 643, 1186
PspCI CACGTG 1 cut(s) 763
PspEI GGTNACC 1 cut(s) 1315
PspFI CCCAGC 1 cut(s) 1135
PspGI CCWGG 3 cut(s) 97, 643, 1186
PspPI GGNCC 2 cut(s) 203, 410
PstI CTGCAG 1 cut(s) 907
PsuI RGATCY 1 cut(s) 259
RruI TCGCGA 1 cut(s) 842
RsaI GTAC 6 cut(s) 30, 374, 380, 831, 1143, 1325
RsaNI GTAC 6 cut(s) 29, 373, 379, 830, 1142, 1324
SapI GCTCTTC 1 cut(s) 921
SaqAI TTAA 7 cut(s) 423, 797, 821, 920, 1089, 1148, 1208
SatI GCNGC 2 cut(s) 731, 740
Sau3AI GATC 8 cut(s) 259, 366, 432, 529, 757, 939, 1014, 1168
Sau96I GGNCC 2 cut(s) 203, 410
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 6 cut(s) 99, 257, 645, 1188, 1368, 1382
SduI GDGCHC 2 cut(s) 399, 575
SexAI ACCWGGT 1 cut(s) 97
SfaNI GCATC 4 cut(s) 496, 518, 955, 1229
SfcI CTRYAG 3 cut(s) 710, 744, 903
SfuI TTCGAA 1 cut(s) 1399
SmlI CTYRAG 2 cut(s) 383, 776
SmoI CTYRAG 2 cut(s) 383, 776
SsiI CCGC 3 cut(s) 537, 731, 1245
SspMI CTAG 1 cut(s) 863
StyD4I CCNGG 6 cut(s) 97, 255, 643, 1186, 1366, 1380
TaaI ACNGT 3 cut(s) 138, 1030, 1086
TaiI ACGT 2 cut(s) 374, 765
TaqI TCGA 2 cut(s) 756, 1399
TatI WGTACW 2 cut(s) 829, 1323
TauI GCSGC 1 cut(s) 733
TfiI GAWTC 2 cut(s) 70, 1257
Tru1I TTAA 7 cut(s) 423, 797, 821, 920, 1089, 1148, 1208
Tru9I TTAA 7 cut(s) 423, 797, 821, 920, 1089, 1148, 1208
TscAI CASTG 2 cut(s) 912, 1344
TseFI GTSAC 1 cut(s) 1315
TseI GCWGC 1 cut(s) 739
Tsp45I GTSAC 1 cut(s) 1315
TspDTI ATGAA 4 cut(s) 166, 290, 598, 1222
TspGWI ACGGA 2 cut(s) 341, 938
TspRI CASTG 2 cut(s) 912, 1344
Van91I CCANNNNNTGG 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 710
XapI RAATTY 4 cut(s) 497, 583, 807, 1228
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 1 cut(s) 863
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.