Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

46446709 .. 46448280

Gene Structure 1572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025523

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTGATAATTGGGTTTTTGGTGGTGCTGTGGCGGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGCGGTGCCGCTTAAGGAAGAGGAAGATGAGTTTGAGGTTGCGTCGGGCAAGACTAGGGTGACTATTTTCTCTAGGACTCAGACCAGCACCGCTGAAGAAGGAGCAATGACAACTTGTATACCAGCTGGAATTGGTAAACTGCATTTCAGAGTAAGGGACTTCAATGCACAAGGCTGTAGAAAGGCTTCTTGGGTCACATTTAGTGAGCTTTCATGGTCACGTGGGGTTTCAAAGTTCTTGCAAATTCAGAGATGTAACTCCTCCCAATCTCCAATTAATGAGAGCTCAAAGCCCTTAAGAACCATCACTTCATCAAGTTTGCGAGATGGTTCCACTAAATTCTTCAATTTTACTTTTATTGGTAGTGGAGTTGCTGGCCTCCGCTATGCCCTGGAAGTGGCAAAACATGGATCTGTTGCTGTCATTACCAAGGCTGAGCCTCATGAAAGTAATACAAATTATGCTCAAGGTGGTGTTGGTGCTGTACTGTGCCCTTCAGATTCTGTGGAGTCATGTGCAGGACACCATTGTAGCAGGAGCTTATCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

219

Amino Acids

23.64

Weight (kDa)

9.13

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	155 - 202	7.4e-10	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	6 cut(s)	5, 64, 107, 113, 195, 487
AclWI	GGATC	1 cut(s)	523
AcsI	RAATTY	2 cut(s)	348, 443
AcuI	CTGAAG	2 cut(s)	219, 585
AcvI	CACGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflII	CTTAAG	2 cut(s)	116, 400
AgsI	TTSAA	4 cut(s)	27, 268, 336, 451
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	495
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
AluBI	AGCT	5 cut(s)	103, 230, 313, 390, 645
AluI	AGCT	5 cut(s)	103, 230, 313, 390, 645
Alw21I	GWGCWC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	523
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	348, 443
AseI	ATTAAT	1 cut(s)	381
Asp700I	GAANNNNTTC	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	22, 106, 175
BaeGI	GKGCMC	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	392
BarI	GAAGNNNNNNTAC	2 cut(s)	274, 306
BbrPI	CACGTG	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	416, 425
BciT130I	CCWGG	1 cut(s)	497
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	3 cut(s)	84, 159, 177
BfmI	CTRYAG	1 cut(s)	280
BfrI	CTTAAG	2 cut(s)	116, 400
BisI	GCNGC	2 cut(s)	101, 113
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	2 cut(s)	102, 114
Bme1390I	CCNGG	1 cut(s)	497
BmiI	GGNNCC	2 cut(s)	111, 436
BmrFI	CCNGG	1 cut(s)	497
Bpu1102I	GCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	495, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	495, 534
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	197, 531
BseRI	GAGGAG	1 cut(s)	355
BseSI	GKGCMC	1 cut(s)	599
BseXI	GCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	483
Bsp1286I	GDGCHC	2 cut(s)	392, 599
Bsp143I	GATC	2 cut(s)	68, 515
Bsp1720I	GCTNAGC	1 cut(s)	540
BspACI	CCGC	6 cut(s)	5, 64, 107, 113, 195, 487
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	196, 532
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	111, 436
BspPI	GGATC	1 cut(s)	523
BspT107I	GGYRCC	1 cut(s)	109
BspTI	CTTAAG	2 cut(s)	116, 400
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	495, 534
BssMI	GATC	2 cut(s)	68, 515
BssNAI	GTATAC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	534
Bst1107I	GTATAC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	1 cut(s)	594
Bst6I	CTCTTC	1 cut(s)	117
BstAFI	CTTAAG	2 cut(s)	116, 400
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	105, 481
BstDEI	CTNAG	2 cut(s)	183, 540
BstKTI	GATC	2 cut(s)	71, 518
BstMBI	GATC	2 cut(s)	68, 515
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	495
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
BstZ17I	GTATAC	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	483
Cac8I	GCNNGC	2 cut(s)	105, 481
CaiI	CAGNNNCTG	1 cut(s)	608
CciI	TCATGA	1 cut(s)	547
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	590
CviAII	CATG	4 cut(s)	318, 512, 548, 618
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	2 cut(s)	183, 540
DpnI	GATC	2 cut(s)	70, 517
DpnII	GATC	2 cut(s)	68, 515
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	390
Eco57I	CTGAAG	2 cut(s)	219, 585
Eco72I	CACGTG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	4 cut(s)	321, 515, 551, 621
FaiI	YATR	8 cut(s)	224, 319, 492, 513, 549, 567, 619, 653
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	4 cut(s)	317, 511, 547, 617
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	101, 113
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	101, 113
FspBI	CTAG	3 cut(s)	84, 159, 177
GluI	GCNGC	2 cut(s)	101, 113
HaeIII	GGCC	1 cut(s)	483
HgaI	GACGC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	321, 515, 551, 621
HinfI	GANTC	3 cut(s)	181, 605, 614
HphI	GGTGA	3 cut(s)	22, 106, 175
Hpy166II	GTNNAC	2 cut(s)	224, 242
Hpy188I	TCNGA	5 cut(s)	76, 186, 254, 354, 604
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	2 cut(s)	224, 242
Hpy99I	CGWCG	2 cut(s)	22, 151
HpyAV	CCTTC	2 cut(s)	197, 609
HpyCH4III	ACNGT	1 cut(s)	594
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	4 cut(s)	247, 272, 346, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	2 cut(s)	183, 540
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	4 cut(s)	321, 515, 551, 621
Kzo9I	GATC	2 cut(s)	68, 515
LmnI	GCTCC	2 cut(s)	206, 642
LpnPI	CCDG	9 cut(s)	89, 202, 216, 240, 465, 482, 509, 609, 625
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	3 cut(s)	84, 159, 177
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	4 cut(s)	163, 298, 321, 359
MalI	GATC	2 cut(s)	70, 517
MboI	GATC	2 cut(s)	68, 515
MboII	GAAGA	4 cut(s)	134, 140, 212, 439
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	2 cut(s)	392, 599
MluCI	AATT	8 cut(s)	27, 39, 234, 348, 378, 443, 451, 562
MlyI	GAGTC	2 cut(s)	175, 623
MnlI	CCTC	5 cut(s)	118, 133, 376, 494, 555
MroXI	GAANNNNTTC	1 cut(s)	289
MseI	TTAA	3 cut(s)	117, 381, 401
MspA1I	CMGCKG	3 cut(s)	103, 197, 230
MspCI	CTTAAG	2 cut(s)	116, 400
MspR9I	CCNGG	1 cut(s)	497
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	2 cut(s)	68, 515
NlaIII	CATG	4 cut(s)	321, 515, 551, 621
NlaIV	GGNNCC	2 cut(s)	111, 436
NmuCI	GTSAC	3 cut(s)	163, 298, 321
PagI	TCATGA	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	605
PkrI	GCNGC	2 cut(s)	102, 114
PleI	GAGTC	2 cut(s)	175, 622
PmaCI	CACGTG	1 cut(s)	326
PmlI	CACGTG	1 cut(s)	326
PpsI	GAGTC	2 cut(s)	175, 622
Ppu21I	YACGTR	1 cut(s)	326
PshBI	ATTAAT	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	495
PspCI	CACGTG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	111, 436
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	515
PvuII	CAGCTG	2 cut(s)	103, 230
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	3 cut(s)	117, 381, 401
SatI	GCNGC	2 cut(s)	101, 113
Sau3AI	GATC	2 cut(s)	68, 515
SchI	GAGTC	2 cut(s)	175, 623
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	2 cut(s)	392, 599
SetI	ASST	8 cut(s)	105, 144, 232, 315, 328, 392, 577, 647
SfcI	CTRYAG	1 cut(s)	280
SmlI	CTYRAG	3 cut(s)	116, 400, 570
SmoI	CTYRAG	3 cut(s)	116, 400, 570
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	8 cut(s)	27, 39, 234, 348, 378, 443, 451, 562
SsiI	CCGC	6 cut(s)	5, 64, 107, 113, 195, 487
SspMI	CTAG	3 cut(s)	84, 159, 177
SstI	GAGCTC	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	1 cut(s)	594
TaiI	ACGT	1 cut(s)	328
TasI	AATT	8 cut(s)	27, 39, 234, 348, 378, 443, 451, 562
TatI	WGTACW	1 cut(s)	589
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	3 cut(s)	117, 381, 401
Tru9I	TTAA	3 cut(s)	117, 381, 401
TseFI	GTSAC	3 cut(s)	163, 298, 321
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	3 cut(s)	163, 298, 321
TspDTI	ATGAA	3 cut(s)	306, 405, 564
Vha464I	CTTAAG	2 cut(s)	116, 400
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	2 cut(s)	348, 443
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	3 cut(s)	84, 159, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.