Rroxscaffold_1G00009210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001346
Physical Location & Seq
Forward (+)
11598780 .. 11601484
2705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009210.1

Sequence Viewer

Length: 294 bp
ATGTTGCTCTGTATCATTGCTCTTTATCGTTGCTTTGTATATGTTGCAAATCTCAACAATATTCTCGCATTGTATGTCCAAGTATTGGATGCAGAGCCTCTTTTGAAGGAGGCCCTTCAAGCCGAGGGTAAACAAAAGGATGTACTTAAAGCTGCCGGTGCATTGTTTTCACATATTTGTGAGGAAAAGGCACCCGAATTTGAGCATATCGCTCTACCCAGAGAATTCGTCCAAGCTACTGTATTTGCATCAATGAGTATATCTCTATGGTGTCTTCTGTTCCTCCATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.87

Weight (kDa)

5.48

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AccB7I CCANNNNNTGG 1 cut(s) 85
AcsI RAATTY 2 cut(s) 197, 224
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 106, 119
AluBI AGCT 2 cut(s) 152, 236
AluI AGCT 2 cut(s) 152, 236
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 197, 224
AspS9I GGNCC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 139
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 2 cut(s) 79, 257
BpiI GAAGAC 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 247, 279
BsaJI CCNNGG 2 cut(s) 123, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse118I RCCGGY 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 123, 286
BseGI GGATG 2 cut(s) 94, 145
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 85
BsnI GGCC 1 cut(s) 113
Bsp19I CCATGG 1 cut(s) 286
BspANI GGCC 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 123, 286
BssT1I CCWWGG 1 cut(s) 286
Bst4CI ACNGT 1 cut(s) 241
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 2 cut(s) 94, 145
BstMWI GCNNNNNNNGC 2 cut(s) 119, 158
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 2 cut(s) 94, 145
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 143
CviAII CATG 1 cut(s) 287
CviJI RGCY 5 cut(s) 97, 113, 122, 152, 236
CviKI_1 RGCY 5 cut(s) 97, 113, 122, 152, 236
CviQI GTAC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 290
FaiI YATR 8 cut(s) 40, 42, 75, 174, 207, 260, 268, 288
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 101, 152
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 156
Hin1II CATG 1 cut(s) 290
HpaII CCGG 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 100, 125
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 47, 92, 161, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 158
Hsp92II CATG 1 cut(s) 290
LpnPI CCDG 2 cut(s) 169, 232
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 79, 257
MboII GAAGA 1 cut(s) 266
MluCI AATT 2 cut(s) 197, 224
MnlI CCTC 5 cut(s) 103, 108, 118, 175, 293
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 119, 158
NcoI CCATGG 1 cut(s) 286
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 148
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 112
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 112
SetI ASST 2 cut(s) 154, 238
SfaNI GCATC 2 cut(s) 79, 257
SgeI CNNG 8 cut(s) 77, 92, 131, 136, 168, 206, 231, 245
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 2 cut(s) 197, 224
SspI AATATT 1 cut(s) 61
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 241
TasI AATT 2 cut(s) 197, 224
TatI WGTACW 1 cut(s) 142
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 1 cut(s) 152
Van91I CCANNNNNTGG 1 cut(s) 85
XapI RAATTY 2 cut(s) 197, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.