RLG00000002366

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001346
Physical Location & Seq
Forward (+)
32855895 .. 32858861
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002366

Sequence Viewer

Length: 489 bp
ATGGACATGGCGGTGGTGATAGCGAGGACTTCAATTGAGTTGATAATTGGGTTTTTGGTGGTGCTGTGGTGGAGATCGTCTGATAAGACTAGTTGGGTGGTGAAGCAGTTGGCTCTGAGCTCCAGCGGTCCAGCCTCCAGGAACTGTGTGAATCAAAGGGCCACAAATGAAAGCTTGAAGAGAATAAAGATAAAAAGTGAAACGAAACTGAAAAGCATTGGAGTTTCAAGCTCTTTTAAGATGTTTAATTTTTCCATGGATTCATTCCTTCAAGCAATGGGAGGAAACAGAGGAAGTGCAGATAGAGATCGAGGATTTGAGAGGGAACTTGAAGCAATGGGAGATATAAAGCACCGGAACATTGTGACTCTTAATGGTGTCACCCTTTTGCTTCTCCTTGCTCTGCAGAGTTATGGGTTCGTTCTTTCTTTTAAGGTTTCACCTGCTACTACTATTATTGCTGCAACTGATTTATCTGTTGTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

163

Amino Acids

17.83

Weight (kDa)

10.0

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 451
Acc36I ACCTGC 1 cut(s) 451
AciI CCGC 2 cut(s) 11, 126
AgsI TTSAA 5 cut(s) 33, 178, 228, 272, 332
AhlI ACTAGT 1 cut(s) 89
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 3 cut(s) 120, 174, 231
AluI AGCT 3 cut(s) 120, 174, 231
Alw21I GWGCWC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 144
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 461
AspS9I GGNCC 2 cut(s) 128, 159
AsuHPI GGTGA 4 cut(s) 28, 112, 373, 432
AvaII GGWCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 448
BciT130I CCWGG 1 cut(s) 139
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 404
BfuAI ACCTGC 1 cut(s) 451
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 128, 159
BmrFI CCNGG 1 cut(s) 139
BpmI CTGGAG 2 cut(s) 106, 121
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 354
Bse3DI GCAATG 2 cut(s) 282, 342
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 255
BseJI GATNNNNATC 1 cut(s) 306
BseMI GCAATG 2 cut(s) 282, 342
BseMII CTCAG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 355
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 74, 307
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 2 cut(s) 11, 126
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 408
BspMI ACCTGC 1 cut(s) 451
BsrDI GCAATG 2 cut(s) 282, 342
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 2 cut(s) 74, 307
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 116
BstDSI CCRYGG 1 cut(s) 255
BstKTI GATC 2 cut(s) 77, 310
BstMBI GATC 2 cut(s) 74, 307
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 448
BsuRI GGCC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 451
CaiI CAGNNNCTG 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 128, 159
CviAII CATG 2 cut(s) 7, 256
CviJI RGCY 6 cut(s) 113, 120, 134, 161, 174, 231
CviKI_1 RGCY 6 cut(s) 113, 120, 134, 161, 174, 231
DdeI CTNAG 1 cut(s) 116
DpnI GATC 2 cut(s) 76, 309
DpnII GATC 2 cut(s) 74, 307
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 2 cut(s) 10, 259
FaiI YATR 4 cut(s) 8, 257, 347, 414
FatI CATG 2 cut(s) 6, 255
Fnu4HI GCNGC 1 cut(s) 462
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 90
GluI GCNGC 1 cut(s) 462
GsuI CTGGAG 2 cut(s) 106, 121
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 355
Hin1II CATG 2 cut(s) 10, 259
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 3 cut(s) 151, 260, 367
HpaII CCGG 1 cut(s) 355
HphI GGTGA 4 cut(s) 28, 112, 373, 432
Hpy188I TCNGA 2 cut(s) 82, 117
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 299, 406, 464
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 2 cut(s) 10, 259
Kzo9I GATC 2 cut(s) 74, 307
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 6 cut(s) 124, 136, 144, 151, 368, 456
Lsp1109I GCAGC 1 cut(s) 448
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 364, 379
MalI GATC 2 cut(s) 76, 309
MboI GATC 2 cut(s) 74, 307
MboII GAAGA 1 cut(s) 190
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 3 cut(s) 33, 45, 247
MlyI GAGTC 1 cut(s) 361
MnlI CCTC 6 cut(s) 18, 145, 275, 284, 305, 315
MseI TTAA 4 cut(s) 237, 246, 372, 432
MslI CAYNNNNRTG 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 139
MunI CAATTG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 139
NcoI CCATGG 1 cut(s) 255
NdeII GATC 2 cut(s) 74, 307
NlaIII CATG 2 cut(s) 10, 259
NmuCI GTSAC 2 cut(s) 364, 379
PaqCI CACCTGC 1 cut(s) 451
PfeI GAWTC 2 cut(s) 151, 260
PfoI TCCNGGA 1 cut(s) 137
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Psp124BI GAGCTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspPI GGNCC 2 cut(s) 128, 159
PstI CTGCAG 1 cut(s) 408
PstNI CAGNNNCTG 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 122
SaqAI TTAA 4 cut(s) 237, 246, 372, 432
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 2 cut(s) 74, 307
Sau96I GGNCC 2 cut(s) 128, 159
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 1 cut(s) 122
SetI ASST 5 cut(s) 122, 176, 233, 438, 445
SfcI CTRYAG 1 cut(s) 404
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 11
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 3 cut(s) 33, 45, 247
SsiI CCGC 2 cut(s) 11, 126
SspMI CTAG 1 cut(s) 90
SstI GAGCTC 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 310
TasI AATT 3 cut(s) 33, 45, 247
TfiI GAWTC 2 cut(s) 151, 260
Tru1I TTAA 4 cut(s) 237, 246, 372, 432
Tru9I TTAA 4 cut(s) 237, 246, 372, 432
TseFI GTSAC 2 cut(s) 364, 379
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 2 cut(s) 364, 379
TspDTI ATGAA 2 cut(s) 183, 252
VpaK11BI GGWCC 1 cut(s) 128
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.