Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

28268320 .. 28273221

Gene Structure 4902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG233500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGGTGGTGATAGTGACGACTTCAATTGAGTTGATATTTGGGTTTTTGGTGGTGCTGTGGCAGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGCGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCATCGGGCAAGACTAGGGTGACTATTTTCTCTGGGACTCAGACCGGCACCGCTGAAGGTTTGGAGGGAGAAGAACGGAATGTTCCAACAGATGACGGAACAGAGCTCTTTCAGGTCTGCGAACAATGTAACAATGTCAAATATGAAAGGGAGGGATATTTCATCACTGTTGATATTGAGAAAGGGATGCAAGATGGACAAGAGGTGGTTTTCTATGAGGATGGTGAACCCATAATTGATGGAGAACCTGGAGATTTAAAAACTCTGCCAGGACCTGTTAGGAGAGGCAACAATATCTTGTTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

150

Amino Acids

16.65

Weight (kDa)

4.33

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	109, 191
AciI	CCGC	4 cut(s)	5, 107, 113, 195
AcuI	CTGAAG	1 cut(s)	219
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	27
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	391, 412
AluBI	AGCT	2 cut(s)	103, 250
AluI	AGCT	2 cut(s)	103, 250
Alw21I	GWGCWC	1 cut(s)	252
AlwNI	CAGNNNCTG	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	4 cut(s)	22, 106, 175, 380
AvaII	GGWCC	1 cut(s)	416
BanI	GGYRCC	2 cut(s)	109, 191
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	3 cut(s)	332, 359, 377
BciT130I	CCWGG	2 cut(s)	393, 414
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	84, 159
BfrI	CTTAAG	1 cut(s)	116
BisI	GCNGC	2 cut(s)	101, 113
BlsI	GCNGC	2 cut(s)	102, 114
Bme1390I	CCNGG	2 cut(s)	393, 414
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	2 cut(s)	111, 193
BmrFI	CCNGG	2 cut(s)	393, 414
BmsI	GCATC	2 cut(s)	155, 321
BpmI	CTGGAG	1 cut(s)	414
Bse118I	RCCGGY	1 cut(s)	188
BseBI	CCWGG	2 cut(s)	393, 414
BseGI	GGATG	2 cut(s)	336, 370
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	112
BshNI	GGYRCC	2 cut(s)	109, 191
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	68
BspACI	CCGC	4 cut(s)	5, 107, 113, 195
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	111, 193
BspT107I	GGYRCC	2 cut(s)	109, 191
BspTI	CTTAAG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	1 cut(s)	68
Bst2UI	CCWGG	2 cut(s)	393, 414
Bst4CI	ACNGT	1 cut(s)	313
BstAFI	CTTAAG	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	336, 370
BstKTI	GATC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	2 cut(s)	393, 414
BstSCI	CCNGG	2 cut(s)	391, 412
BstV1I	GCAGC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	336, 370
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	416
CviAII	CATG	1 cut(s)	450
CviJI	RGCY	2 cut(s)	103, 250
CviKI_1	RGCY	2 cut(s)	103, 250
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
DraI	TTTAAA	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	416
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	391, 412
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	1 cut(s)	453
FaiI	YATR	4 cut(s)	288, 360, 377, 451
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	449
Fnu4HI	GCNGC	2 cut(s)	101, 113
FokI	GGATG	2 cut(s)	343, 377
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	101, 113
FspBI	CTAG	2 cut(s)	84, 159
GluI	GCNGC	2 cut(s)	101, 113
GsuI	CTGGAG	1 cut(s)	414
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	1 cut(s)	181
HpaI	GTTAAC	1 cut(s)	447
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	4 cut(s)	22, 106, 175, 380
Hpy166II	GTNNAC	2 cut(s)	371, 447
Hpy188I	TCNGA	2 cut(s)	76, 186
Hpy8I	GTNNAC	2 cut(s)	371, 447
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	146, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	453
KspAI	GTTAAC	1 cut(s)	447
Kzo9I	GATC	1 cut(s)	68
LpnPI	CCDG	9 cut(s)	89, 162, 202, 242, 378, 399, 405, 426, 432
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	2 cut(s)	155, 321
MaeI	CTAG	2 cut(s)	84, 159
MaeIII	GTNAC	3 cut(s)	16, 163, 272
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	2 cut(s)	140, 227
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	27, 378
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	8 cut(s)	115, 118, 133, 202, 289, 340, 355, 422
MseI	TTAA	3 cut(s)	117, 401, 446
MspA1I	CMGCKG	2 cut(s)	103, 197
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	393, 414
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	393, 414
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	1 cut(s)	453
NlaIV	GGNNCC	2 cut(s)	111, 193
NmuCI	GTSAC	2 cut(s)	16, 163
PkrI	GCNGC	2 cut(s)	102, 114
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	391, 412
PspGI	CCWGG	2 cut(s)	391, 412
PspN4I	GGNNCC	2 cut(s)	111, 193
PspPI	GGNCC	1 cut(s)	416
PspPPI	RGGWCCY	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	117, 401, 446
SatI	GCNGC	2 cut(s)	101, 113
Sau3AI	GATC	1 cut(s)	68
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	393, 414
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	105, 144, 205, 252, 261, 351, 394, 421
SfaNI	GCATC	2 cut(s)	155, 321
SinI	GGWCC	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	2 cut(s)	27, 378
SsiI	CCGC	4 cut(s)	5, 107, 113, 195
SspMI	CTAG	2 cut(s)	84, 159
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	391, 412
TaaI	ACNGT	1 cut(s)	313
TasI	AATT	2 cut(s)	27, 378
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	3 cut(s)	117, 401, 446
Tru9I	TTAA	3 cut(s)	117, 401, 446
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	2 cut(s)	16, 163
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	2 cut(s)	16, 163
TspDTI	ATGAA	2 cut(s)	295, 303
TspGWI	ACGGA	2 cut(s)	235, 255
TspRI	CASTG	1 cut(s)	316
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	416
XspI	CTAG	2 cut(s)	84, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.