Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000483.1

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Forward (+)

38758 .. 41358

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000483.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgtcgttggaaagctctcttccctctcttcatttctatggtggtttggtgattgattctggactgtggagggtgcagcaactagaagaagaggacagtcactgtagcagatcgggatttccattgatttccggcgattccggccgtctccggccaccaaactggcgtcgaaggtcgagccttattagtactcctccctgcttactatgtgttcacggggccacctcggatttcagggtgaaattcagggggggtcctgtcaagtataggctggagtatgacaacaaaagaatcacaaccatcaacaagttgatcagcctactgcaaatggctgagagggataatgagattctcttgaacaacaatgccaggcccactaggacaaagaaaattcccgaggctaattatggaaaaatgaaaagcggaaagaactccagtgcaaaggggtttagacgtgctgatccctacccacatggcaacaatgcaccacgtggaaagggacatggggatcattggaacaacgtgcaaaaggcacccaagagcatctccaatggagatgtcttttgggtttggtcaaattcaaatttgacatatgacatggctaaattgacatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

205

Amino Acids

23.1

Weight (kDa)

9.86

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	532
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	2 cut(s)	455, 516
AcoI	YGGCCR	2 cut(s)	142, 152
AcsI	RAATTY	4 cut(s)	242, 390, 577, 583
AcvI	CACGTG	1 cut(s)	491
AcyI	GRCGYC	1 cut(s)	166
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	611
AgsI	TTSAA	2 cut(s)	358, 582
AjiI	CACGTC	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	455, 516
AlwNI	CAGNNNCTG	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	4 cut(s)	142, 152, 219, 371
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	4 cut(s)	242, 390, 577, 583
AspS9I	GGNCC	3 cut(s)	219, 254, 372
AsuHPI	GGTGA	2 cut(s)	61, 250
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	532
BbrPI	CACGTG	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	370
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	83, 378
BfmI	CTRYAG	1 cut(s)	103
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
BmcAI	AGTACT	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	455
BmgT120I	GGNCC	3 cut(s)	219, 254, 372
BmiI	GGNNCC	3 cut(s)	220, 255, 534
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	552
BpmI	CTGGAG	2 cut(s)	293, 418
BsaAI	YACGTR	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	225, 396
Bse1I	ACTGG	2 cut(s)	167, 435
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	225, 396
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	167, 435
BseRI	GAGGAG	1 cut(s)	183
BseX3I	CGGCCG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	4 cut(s)	144, 154, 221, 373
BshNI	GGYRCC	1 cut(s)	532
BsiEI	CGRYCG	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	3 cut(s)	132, 141, 151
BslFI	GGGAC	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	4 cut(s)	144, 154, 221, 373
BsoBI	CYCGRG	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	110, 312, 460, 508
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	4 cut(s)	144, 154, 221, 373
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	220, 255, 534
BspPI	GGATC	2 cut(s)	455, 516
BspT107I	GGYRCC	1 cut(s)	532
BsrI	ACTGG	2 cut(s)	167, 435
BssECI	CCNNGG	2 cut(s)	225, 396
BssMI	GATC	4 cut(s)	110, 312, 460, 508
BssNI	GRCGYC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	3 cut(s)	66, 98, 104
Bst6I	CTCTTC	3 cut(s)	24, 33, 84
BstACI	GRCGYC	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	491
BstDEI	CTNAG	1 cut(s)	333
BstKTI	GATC	4 cut(s)	113, 315, 463, 511
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	4 cut(s)	110, 312, 460, 508
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	162
BstZI	CGGCCG	1 cut(s)	142
BsuRI	GGCC	4 cut(s)	144, 154, 221, 373
BtrI	CACGTC	1 cut(s)	455
BtsIMutI	CAGTG	2 cut(s)	100, 442
CaiI	CAGNNNCTG	1 cut(s)	102
Cfr13I	GGNCC	3 cut(s)	219, 254, 372
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	4 cut(s)	473, 503, 598, 612
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	4 cut(s)	112, 314, 462, 510
DpnII	GATC	4 cut(s)	110, 312, 460, 508
DraIII	CACNNNGTG	1 cut(s)	491
EaeI	YGGCCR	2 cut(s)	142, 152
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	24, 33, 84
EarI	CTCTTC	3 cut(s)	24, 33, 84
EclXI	CGGCCG	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	254
Eco52I	CGGCCG	1 cut(s)	142
Eco72I	CACGTG	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	368
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	4 cut(s)	476, 506, 601, 615
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	4 cut(s)	472, 502, 597, 611
FauNDI	CATATG	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	2 cut(s)	83, 378
GluI	GCNGC	1 cut(s)	77
GsuI	CTGGAG	2 cut(s)	293, 418
HaeIII	GGCC	4 cut(s)	144, 154, 221, 373
HapII	CCGG	3 cut(s)	132, 141, 151
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	4 cut(s)	476, 506, 601, 615
HinfI	GANTC	4 cut(s)	56, 137, 291, 349
HpaII	CCGG	3 cut(s)	132, 141, 151
HphI	GGTGA	2 cut(s)	61, 250
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	4 cut(s)	60, 114, 355, 395
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	3 cut(s)	66, 98, 104
HpyCH4IV	ACGT	3 cut(s)	454, 490, 522
HpyCH4V	TGCA	5 cut(s)	76, 325, 440, 485, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	3 cut(s)	454, 490, 522
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	476, 506, 601, 615
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	110, 312, 460, 508
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	552
MaeI	CTAG	2 cut(s)	83, 378
MaeII	ACGT	3 cut(s)	454, 490, 522
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	4 cut(s)	112, 314, 462, 510
MboI	GATC	4 cut(s)	110, 312, 460, 508
MboII	GAAGA	4 cut(s)	11, 20, 98, 101
MluCI	AATT	6 cut(s)	242, 390, 403, 577, 583, 605
MnlI	CCTC	7 cut(s)	34, 63, 85, 204, 235, 330, 391
MseI	TTAA	1 cut(s)	616
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	3 cut(s)	132, 141, 151
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	141
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	4 cut(s)	110, 312, 460, 508
NlaIII	CATG	4 cut(s)	476, 506, 601, 615
NlaIV	GGNNCC	3 cut(s)	220, 255, 534
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	615
PciI	ACATGT	1 cut(s)	611
PfeI	GAWTC	4 cut(s)	56, 137, 291, 349
PkrI	GCNGC	1 cut(s)	78
PmaCI	CACGTG	1 cut(s)	491
PmlI	CACGTG	1 cut(s)	491
Ppu21I	YACGTR	1 cut(s)	491
PpuMI	RGGWCCY	1 cut(s)	254
PscI	ACATGT	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	368
PspCI	CACGTG	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	3 cut(s)	220, 255, 534
PspPI	GGNCC	3 cut(s)	219, 254, 372
PspPPI	RGGWCCY	1 cut(s)	254
PstNI	CAGNNNCTG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	616
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	4 cut(s)	110, 312, 460, 508
Sau96I	GGNCC	3 cut(s)	219, 254, 372
ScaI	AGTACT	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	370
SetI	ASST	6 cut(s)	17, 176, 227, 457, 493, 525
SfaNI	GCATC	1 cut(s)	552
SfcI	CTRYAG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	6 cut(s)	242, 390, 403, 577, 583, 605
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	2 cut(s)	83, 378
StyD4I	CCNGG	1 cut(s)	368
TaaI	ACNGT	3 cut(s)	66, 98, 104
TaiI	ACGT	3 cut(s)	457, 493, 525
TaqI	TCGA	2 cut(s)	169, 176
TasI	AATT	6 cut(s)	242, 390, 403, 577, 583, 605
TatI	WGTACW	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	56, 137, 291, 349
Tru1I	TTAA	1 cut(s)	616
Tru9I	TTAA	1 cut(s)	616
TscAI	CASTG	2 cut(s)	107, 442
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	20, 431
TspRI	CASTG	2 cut(s)	107, 442
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	4 cut(s)	242, 390, 577, 583
XceI	RCATGY	1 cut(s)	615
XspI	CTAG	2 cut(s)	83, 378
ZrmI	AGTACT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.